View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_72 (Length: 244)
Name: NF17080_low_72
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 21056731 - 21056952
Alignment:
| Q |
18 |
attttgatttactcgacatcatttcnnnnnnnattactaaaaggtgatctccagtttcgttgtccagagtccaaacatagctttaattgatttctagaac |
117 |
Q |
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| T |
21056731 |
attttgatttactcgacatcgtttctttttttattactaaaaggtgatctccagtttcgttgtccagagtccagacatagctttaattgatttctagaac |
21056830 |
T |
|
| Q |
118 |
tcaagcttcctttaattgactatttaaattatttgaacctgtttgtaattattgtaaatgggagaaacatcttgttattatctatagagatgaatatagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056831 |
tcaagcttcctttaattgactatttaaattatttgaacctgtttgtaattattttaaatgggagaaacatcttgttattatctatagagatgaatatagc |
21056930 |
T |
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| Q |
218 |
tactgcttcacttcttctcact |
239 |
Q |
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|||||||||||||||| ||||| |
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| T |
21056931 |
tactgcttcacttcttttcact |
21056952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 26365210 - 26365061
Alignment:
| Q |
92 |
acatagctttaattgatt-tctagaactcaagcttcctttaattgactatttaaattatttgaacctgtttgtaattattgtaaatgggagaaacatctt |
190 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
26365210 |
acatagctttaattgattatctagaactcaagcttcctttaattgactatttaaactatttgaacctgtttataattattttaaaagggagaaacatctt |
26365111 |
T |
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| Q |
191 |
gttattatctatagagatgaata-tagctactgcttcacttcttctcact |
239 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
26365110 |
tttattatctatagagatgaatattagctactgcttcacttcttttcact |
26365061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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