View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_75 (Length: 241)
Name: NF17080_low_75
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 32875639 - 32875857
Alignment:
| Q |
8 |
aaaagactatgtgaaccaacgaatataatttcaaggactaaaatatcgtttactcaaatttaacaagtatacgagtaaatgtgtgaaaaagaaagtgaca |
107 |
Q |
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| T |
32875639 |
aaaagactaagtgaactaacgaatataatttcaaggactaaaatatcgtttactcaaatttaacaagtatacgagtaaatgtgtgaaaaagaaagtgaca |
32875738 |
T |
|
| Q |
108 |
ttaaatgtatttctaataatactctagctaaaatagcttagaacttgtgctatctttggacatttgtattgcttacttttgctcattttgggtaaagaaa |
207 |
Q |
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| T |
32875739 |
ttaaatgtatttctaataacactctagctataatagcttagagcttgtgctatctttgcacaattgtattgcttacttttgctcattttgggtaaagaaa |
32875838 |
T |
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| Q |
208 |
actactttttcagttcata |
226 |
Q |
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||||||||||||||||||| |
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| T |
32875839 |
actactttttcagttcata |
32875857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 32873601 - 32873724
Alignment:
| Q |
8 |
aaaagactatgtgaaccaacgaatataatttcaaggactaaaatatcgttta-------ctcaaatttaacaagtatacgagtaaatgtgtgaaaaagaa |
100 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||| |||||||||||| |
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| T |
32873601 |
aaaagactaaatgaaccaacttatataatttcaaggactaaaatatcatttactctttactcaaatttaacaaatatacgggtaaa--tgtgaaaaagaa |
32873698 |
T |
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| Q |
101 |
agtgacattaaatgtatttctaataa |
126 |
Q |
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|| |||| |||||||||| |||||| |
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| T |
32873699 |
agcgacacaaaatgtatttgtaataa |
32873724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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