View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_76 (Length: 239)

Name: NF17080_low_76
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_76
NF17080_low_76
[»] chr3 (6 HSPs)
chr3 (1-225)||(26981958-26982183)
chr3 (21-138)||(34213110-34213227)
chr3 (49-119)||(1045406-1045476)
chr3 (49-114)||(4778022-4778087)
chr3 (59-114)||(2833339-2833394)
chr3 (50-124)||(41640815-41640889)
[»] chr7 (7 HSPs)
chr7 (22-225)||(23176829-23177033)
chr7 (15-119)||(46028474-46028578)
chr7 (56-142)||(40188198-40188284)
chr7 (47-119)||(26557858-26557930)
chr7 (60-114)||(12258376-12258430)
chr7 (50-114)||(33743463-33743527)
chr7 (59-119)||(33888616-33888676)
[»] chr1 (8 HSPs)
chr1 (11-142)||(21926571-21926701)
chr1 (32-142)||(52372643-52372753)
chr1 (16-142)||(13297550-13297677)
chr1 (21-142)||(44503966-44504087)
chr1 (47-119)||(51871191-51871263)
chr1 (21-142)||(9644333-9644454)
chr1 (23-124)||(25410602-25410703)
chr1 (21-142)||(40799613-40799734)
[»] chr8 (9 HSPs)
chr8 (6-116)||(41926967-41927077)
chr8 (47-142)||(34152030-34152125)
chr8 (57-142)||(42032731-42032816)
chr8 (21-142)||(42241240-42241360)
chr8 (6-142)||(24604784-24604920)
chr8 (50-119)||(2074837-2074906)
chr8 (47-108)||(7656846-7656907)
chr8 (21-102)||(4040370-4040452)
chr8 (50-108)||(36650475-36650533)
[»] chr4 (8 HSPs)
chr4 (39-142)||(45068136-45068239)
chr4 (21-119)||(30251432-30251530)
chr4 (21-142)||(23012352-23012473)
chr4 (73-142)||(4866793-4866862)
chr4 (35-119)||(24065134-24065218)
chr4 (49-142)||(19469638-19469730)
chr4 (50-107)||(48309669-48309726)
chr4 (74-119)||(50655109-50655154)
[»] chr2 (4 HSPs)
chr2 (59-119)||(10994432-10994492)
chr2 (60-142)||(43411515-43411597)
chr2 (59-106)||(29682701-29682748)
chr2 (57-114)||(41074601-41074658)
[»] chr5 (3 HSPs)
chr5 (58-152)||(41650524-41650618)
chr5 (33-142)||(27639460-27639569)
chr5 (21-142)||(3465314-3465435)
[»] scaffold0329 (1 HSPs)
scaffold0329 (58-162)||(18416-18521)
[»] chr6 (4 HSPs)
chr6 (21-108)||(51956-52043)
chr6 (33-142)||(9557380-9557489)
chr6 (23-112)||(12833951-12834041)
chr6 (59-119)||(9755699-9755759)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26982183 - 26981958
Alignment:
Q  1 cgttcggacttctaggaataaccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctg 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  26982183 cgttctgacttctagaaataaccttattttctctggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttg 26982084  T
Q  101 gctaagtgccctgcaagttgctgcacctatcatgagtggga-gttcaacccgttatgtgttggaataggtaggggtttggtggtgctttgcctcagtttg 199  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |  |||||||||||||||||||| ||||||||||||||||||||     
T  26982083 gctaagtgccctgcaagttcctgcacctatcatgagtgggaggttcagcccgttctacgttggaataggtaggggtttcgtggtgctttgcctcagtttt 26981984  T
Q  200 cttggggggtggggcggtggcttctg 225  Q
    ||||||||||||||||||||||||||    
T  26981983 cttggggggtggggcggtggcttctg 26981958  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 34213110 - 34213227
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    |||||||||||||||||||| | || |||||||  ||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||| ||| ||||     
T  34213110 accttattttctctggtggcgctctccgtgaggaacctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttc 34213209  T
Q  121 ctgcacctatcatgagtg 138  Q
     ||||| ||||| |||||    
T  34213210 atgcacttatcacgagtg 34213227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 1045476 - 1045406
Alignment:
Q  49 tgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||| ||| ||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  1045476 tgaggagccagtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagtt 1045406  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 4778022 - 4778087
Alignment:
Q  49 tgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||||||| ||||| |||||||||    
T  4778022 tgaggagcctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgc 4778087  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 2833394 - 2833339
Alignment:
Q  59 gtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgc 2833339  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 41640815 - 41640889
Alignment:
Q  50 gaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgc 124  Q
    |||| ||| |||||||| ||||| ||||||||| ||| ||||||||| | ||||||||||||||| |||| ||||    
T  41640815 gaggagccagtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgc 41640889  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 23177033 - 23176829
Alignment:
Q  22 ccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgc 121  Q
    ||||||||||||| ||||||| || ||||||| |||||||||| ||||||| ||||||||||||| |||| ||||||| || ||||| | ||| ||||      
T  23177033 ccttattttctctagtggcactctccgtgaggagcctgtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttca 23176934  T
Q  122 tgcacctatcatgagtggga-gttcaacccgttatgtgttggaataggtaggggtttggtggtgctttgcctcagtttgcttggggggtggggcggtggc 220  Q
    ||||| |||||||||| ||| || || |||||  | |||||| || | ||||| |||||||| | |||||||| ||| ||||||||| | ||| || |||    
T  23176933 tgcacttatcatgagttggaggtgcagcccgtcctatgttggcatcgatagggttttggtggcggtttgcctcggttcgcttgggggtttgggtgggggc 23176834  T
Q  221 ttctg 225  Q
    |||||    
T  23176833 ttctg 23176829  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 46028578 - 46028474
Alignment:
Q  15 ggaataaccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    ||||| ||||| |||| |||| |||  ||| | |||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||    
T  46028578 ggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgc 46028479  T
Q  115 aagtt 119  Q
     ||||    
T  46028478 tagtt 46028474  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 40188284 - 40188198
Alignment:
Q  56 cctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    ||||||||||||| || ||||||| |||||| |||||||||| || ||||||||||||| ||||  ||||| |||||||||| ||||    
T  40188284 cctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggag 40188198  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 26557930 - 26557858
Alignment:
Q  47 cgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||||| |||||||||||| ||||| ||||| ||||||| | ||||| ||||||||||||||||||| ||||    
T  26557930 cgtgaggagcctgtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagtt 26557858  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 12258376 - 12258430
Alignment:
Q  60 tggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||| |||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgc 12258430  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 33743463 - 33743527
Alignment:
Q  50 gaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    |||| ||| |||||||| ||||| ||| |||||||||  ||||||||| ||||||||||||||||    
T  33743463 gaggagccagtggtggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgc 33743527  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 33888616 - 33888676
Alignment:
Q  59 gtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||||||||||||  ||||||||| || ||||||||| | ||||||||||||||| ||||    
T  33888616 gtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagtt 33888676  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 21926571 - 21926701
Alignment:
Q  11 tctaggaataaccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgcc 110  Q
    |||||||| ||||||||||||||||||||||| |   |||||| | |||||||||||||||| ||||||||||| | ||||||||| |||||||||||||    
T  21926571 tctaggaacaaccttattttctctggtggcactccctgtgaggagtctgtggtggatagagtgaaactcttagcctggaagtggtt-ctggctaagtgcc 21926669  T
Q  111 ctgcaagttgctgcacctatcatgagtgggag 142  Q
    |||| ||||  ||  | |||||||||||||||    
T  21926670 ctgctagttcatgttcttatcatgagtgggag 21926701  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 52372643 - 52372753
Alignment:
Q  32 tctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatc 131  Q
    ||||||||| ||| | |||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||| |||| |||| | | |     
T  52372643 tctggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctcttttt 52372742  T
Q  132 atgagtgggag 142  Q
    |||||||||||    
T  52372743 atgagtgggag 52372753  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 13297550 - 13297677
Alignment:
Q  16 gaataaccttattttctctggtg-gcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    |||| |||||||||||||||||  |||| || |||| || |||  ||||||||||||| |||||||||||||  || |||||| |||||||||| |||||    
T  13297550 gaatgaccttattttctctggtatgcacactccgtggggagcccatggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgc 13297649  T
Q  115 aagttgctgcacctatcatgagtgggag 142  Q
     |||| |||||| |||||||||||||||    
T  13297650 tagttcctgcacttatcatgagtgggag 13297677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 44504087 - 44503966
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    |||| ||||||||||||||| | |||||||||| |||||||||||||| ||| || |||||||||| |||||||||| || ||||||| | ||  ||||     
T  44504087 acctcattttctctggtggcgctcttcgtgaggagcctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttc 44503988  T
Q  121 ctgcacctatcatgagtgggag 142  Q
    |||| | | |||||||||||||    
T  44503987 ctgctcttttcatgagtgggag 44503966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 51871191 - 51871263
Alignment:
Q  47 cgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||||| ||| |||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  51871191 cgtgaggagccagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagtt 51871263  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 9644333 - 9644454
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    ||||||| |||||||||||| | || ||||||| |||| ||||||||||||  |||||||| | || |||||||||||| |||||||| ||| | ||||     
T  9644333 accttatcttctctggtggctctctccgtgaggagcctatggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttc 9644432  T
Q  121 ctgcacctatcatgagtgggag 142  Q
     ||| ||| |||||| ||||||    
T  9644433 ttgctcctttcatgaatgggag 9644454  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 25410703 - 25410602
Alignment:
Q  23 cttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgct 122  Q
    |||||||| | ||||||  | ||||| ||||  |||||| |||||||||| ||||||||||||| |||||||||||||||||||| || ||| |||| ||    
T  25410703 cttattttttttggtggtgctcttcgagaggaacctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcct 25410604  T
Q  123 gc 124  Q
    ||    
T  25410603 gc 25410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 40799613 - 40799734
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    ||||||||||| |||||| | | || ||||||| |||||||||||||||||| |||||||| ||||  |||| |||||| |||||||||  ||| ||||     
T  40799613 accttattttccctggtgacgctctccgtgaggagcctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttc 40799712  T
Q  121 ctgcacctatcatgagtgggag 142  Q
     ||| | | |||||||||||||    
T  40799713 ttgctcttttcatgagtgggag 40799734  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 41926967 - 41927077
Alignment:
Q  6 ggacttctaggaataaccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaa 105  Q
    |||||||| ||||| | |||||||| ||||||||  | ||||| |||| |||||||||||||||||  || |||||||||| ||||||||||||||||||    
T  41926967 ggacttctcggaatgatcttattttttctggtggtgctcttcgagaggagcctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaa 41927066  T
Q  106 gtgccctgcaa 116  Q
    ||||| |||||    
T  41927067 gtgccgtgcaa 41927077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 34152125 - 34152030
Alignment:
Q  47 cgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    ||||||| |||||| ||||||||||  ||||||||||||| ||||||||||||||||||| |||||   |||| |||||| | |||||||||||||    
T  34152125 cgtgaggagcctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggag 34152030  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 42032731 - 42032816
Alignment:
Q  57 ctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    |||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||| | || |||| ||| | |||||||||||    
T  42032731 ctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggag 42032816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 42241360 - 42241240
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    |||||||||| ||||||||| |||| ||||||| |||| ||||||||| ||  ||||||||||||| ||||||||||||||| ||| || || | ||||     
T  42241360 accttatttt-tctggtggcgccctccgtgaggagcctttggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttc 42241262  T
Q  121 ctgcacctatcatgagtgggag 142  Q
    |||||| || | ||||||||||    
T  42241261 ctgcacttaccttgagtgggag 42241240  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 24604784 - 24604920
Alignment:
Q  6 ggacttctaggaataaccttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaa 105  Q
    |||| ||||||||| |||| |||||  ||||||| ||||| || |||| ||  |||||||||||||  |||||||||| ||  ||||||||| |||||||    
T  24604784 ggacgtctaggaatgacctgatttttgctggtggtaccctccgagaggagctggtggtggatagagcgaaactcttagattgaaagtggttcttggctaa 24604883  T
Q  106 gtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    ||| ||||| ||||  | | | |||||||||||||||    
T  24604884 gtggcctgctagttttttctcttatcatgagtgggag 24604920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 2074906 - 2074837
Alignment:
Q  50 gaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    |||| ||| |||||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  2074906 gaggagccagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagtt 2074837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 7656907 - 7656846
Alignment:
Q  47 cgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtg 108  Q
    ||||||| |||||||||||||||||| |||||||||  || ||||||||||||  |||||||    
T  7656907 cgtgaggagcctgtggtggatagagtgaaactcttaatttggaagtggttcctaactaagtg 7656846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 4040452 - 4040370
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggt-ggatagagtaaaactcttagctttgaagtggttcctggc 102  Q
    |||||||||| |||||||||||| |||| |||| | || |||| ||||||||  |||| |||||||| ||||| |||||||||    
T  4040452 accttattttttctggtggcacctttcgagaggagtctttggtgggatagagcgaaacccttagcttggaagtagttcctggc 4040370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 36650533 - 36650475
Alignment:
Q  50 gaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtg 108  Q
    |||| ||| |||||||| ||||| ||||||||||||| | ||||||||| |||||||||    
T  36650533 gaggagccagtggtggacagagttaaactcttagcttgggagtggttccgggctaagtg 36650475  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 45068239 - 45068136
Alignment:
Q  39 gcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtg 138  Q
    |||| |||| ||||| |||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||  |||| || ||| ||||||||| |    
T  45068239 gcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgaggg 45068140  T
Q  139 ggag 142  Q
    ||||    
T  45068139 ggag 45068136  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 30251530 - 30251432
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||||||||||||| |||  | || ||||||| | |||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||| |||||    
T  30251530 accttattttctctgttggggctctccgtgaggagtctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagtt 30251432  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 23012473 - 23012352
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    |||||||||||||||||||  | ||  |||||| ||| |||||||||||||| |||||||||| || ||| |||||| ||||||||||   ||| ||||     
T  23012473 accttattttctctggtggtgctctctgtgaggagcccgtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagttt 23012374  T
Q  121 ctgcacctatcatgagtgggag 142  Q
    |||||| |||||||| ||||||    
T  23012373 ctgcacttatcatgaatgggag 23012352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 4866793 - 4866862
Alignment:
Q  73 aaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |||   ||||| |||||||||||||||    
T  4866793 aaaactcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggag 4866862  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 24065218 - 24065134
Alignment:
Q  35 ggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    |||||||| || | ||||| |||||||||||||||||| ||||||||| | | |||||||||| ||||||||| |||||| ||||    
T  24065218 ggtggcactctccatgaggagcctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagtt 24065134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 19469638 - 19469730
Alignment:
Q  49 tgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    ||||| || |||||||||||||| |||  ||||||||| |||||||||||| | ||||||  |||| |||| |||||| |||||||||||||||    
T  19469638 tgaggagcatgtggtggatagagcaaagttcttagcttggaagtggttcctagttaagtg-tctgctagttcctgcacttatcatgagtgggag 19469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 48309726 - 48309669
Alignment:
Q  50 gaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagt 107  Q
    |||| ||| |||||||||||||| ||||||||||||| ||||| ||||| ||||||||    
T  48309726 gaggagccagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagt 48309669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 50655154 - 50655109
Alignment:
Q  74 aaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagtt 50655109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 10994432 - 10994492
Alignment:
Q  59 gtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  10994432 gtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 10994492  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 43411515 - 43411597
Alignment:
Q  60 tggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggag 142  Q
    ||||||||||||  |||||||||||||  ||||| |||||||||||||| ||||| || | |||||| |||||||||||||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggag 43411597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 29682701 - 29682748
Alignment:
Q  59 gtggtggatagagtaaaactcttagctttgaagtggttcctggctaag 106  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  29682701 gtggtggatagagttaaactcttagcttagaagtggttccaggctaag 29682748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 41074658 - 41074601
Alignment:
Q  57 ctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgc 114  Q
    |||||||||| | ||  |||||||||||||  ||||||||||||||||||||||||||    
T  41074658 ctgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgc 41074601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 41650524 - 41650618
Alignment:
Q  58 tgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtgggagttcaacccgt 152  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||| || | |||||| || |||||||||  || ||||||||    
T  41650524 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagtggtggtgcaacccgt 41650618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 27639569 - 27639460
Alignment:
Q  33 ctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatca 132  Q
    |||||||||||| | |||||  | ||||||||||||||| |||| ||||||||| |||||||||| ||||||| || ||||| ||||  ||||| |||||    
T  27639569 ctggtggcacccatagtgagcagactgtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatca 27639470  T
Q  133 tgagtgggag 142  Q
    ||||| ||||    
T  27639469 tgagtaggag 27639460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 3465435 - 3465314
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttg 120  Q
    |||||||||| |||||||||||| |||| |||| | || ||||||||||||  ||||||||||||| |||||| ||| |||| ||| |  || | ||||     
T  3465435 accttattttttctggtggcacctttcgagaggagtctttggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttc 3465336  T
Q  121 ctgcacctatcatgagtgggag 142  Q
    |||||| || ||||||||||||    
T  3465335 ctgcacttaccatgagtgggag 3465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 18521 - 18416
Alignment:
Q  58 tgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatcatgagtggga-gttcaacccgttatg 156  Q
    ||||||||||||||  |||||| ||| ||  ||||| |||  ||||||||||||||| |||| |||||| |||||||||||||| || ||||||||| ||    
T  18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctg 18422  T
Q  157 tgttgg 162  Q
    ||||||    
T  18421 tgttgg 18416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 51956 - 52043
Alignment:
Q  21 accttattttctctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtg 108  Q
    ||||||| || ||||||||| ||||  | |||| |||| |||||||| |||  ||||||||||||| |||||||||||||||||||||    
T  51956 accttatcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagcttggaagtggttcctggctaagtg 52043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 9557489 - 9557380
Alignment:
Q  33 ctggtggcacccttcgtgaggggcctgtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagttgctgcacctatca 132  Q
    |||||||||||| | ||||  || | ||||||||| | | |||| ||||||||| |||||| |||||| ||||||| ||||| || | |||||| |||||    
T  9557489 ctggtggcacccattgtgataggtcggtggtggatggggcaaaattcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatca 9557390  T
Q  133 tgagtgggag 142  Q
    ||||||||||    
T  9557389 tgagtgggag 9557380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 12834041 - 12833951
Alignment:
Q  23 cttattttctctggtggcacccttcgtgaggggcctgtggtggatagag-taaaactcttagctttgaagtggttcctggctaagtgccct 112  Q
    |||||||| ||| |||| ||||||  |||||||||||||||||||||||     ||||||||||| | ||||||||||| |||||| ||||    
T  12834041 cttattttttctagtggtacccttaatgaggggcctgtggtggatagagcctctactcttagcttgggagtggttcctgactaagtaccct 12833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 9755759 - 9755699
Alignment:
Q  59 gtggtggatagagtaaaactcttagctttgaagtggttcctggctaagtgccctgcaagtt 119  Q
    |||||||| | ||| |||||||||| || ||||||||| | ||||||||||||||| ||||    
T  9755759 gtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagtt 9755699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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