View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_82 (Length: 236)
Name: NF17080_low_82
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 12859565 - 12859783
Alignment:
| Q |
3 |
tgtttcatagttgaagattctgtttccttttttatctgtttggaatttgctcatgaagtttaaattagggggatannnnnnnnggtacacaatttcaggc |
102 |
Q |
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| T |
12859565 |
tgtttcatagttgaagattttgtttccttttttatctgtttagaatttgctcatgaagtttaaattagggggatattttttttggtacacaatttcaggc |
12859664 |
T |
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| Q |
103 |
acatagtacatctgaggaaatatatatctcgaagaaggaaagtgttttgctgccatatagatttatatttttcactagaacaacaaactcagacactagc |
202 |
Q |
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| T |
12859665 |
acatagtacatctgaggaaatatatatctcaaagaaggaaagtgttttgctgccatatagatttatatttttcactagaacaacaaactcagacactagc |
12859764 |
T |
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| Q |
203 |
aagaacactacgtgcttat |
221 |
Q |
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| T |
12859765 |
aataacacttcgtggttat |
12859783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 292858 - 292774
Alignment:
| Q |
125 |
tatatctcgaagaaggaaagtgttttgctgccatatagatttatatttttcactagaacaacaaactcagacactagcaagaacact |
211 |
Q |
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| T |
292858 |
tatatctcaaagaaggaactt-ttttcctgccatatagatttatatttttcactag-acaacaaactcaaacactagcaagagcact |
292774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 9507665 - 9507612
Alignment:
| Q |
157 |
atatagatttatatttttcactagaacaacaaactcagacactagcaagaacact |
211 |
Q |
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| T |
9507665 |
atatagatttatatttttcactag-acaacaaactcaaacactagcaagagcact |
9507612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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