View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_84 (Length: 231)

Name: NF17080_low_84
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_84
NF17080_low_84
[»] chr3 (6 HSPs)
chr3 (1-161)||(45268809-45268968)
chr3 (98-140)||(5641613-5641655)
chr3 (98-132)||(48546202-48546236)
chr3 (98-132)||(53163623-53163657)
chr3 (98-130)||(8125668-8125700)
chr3 (98-134)||(29373454-29373490)
[»] scaffold1787 (1 HSPs)
scaffold1787 (98-141)||(429-472)
[»] chr7 (7 HSPs)
chr7 (98-141)||(14204301-14204344)
chr7 (98-161)||(21388552-21388615)
chr7 (98-161)||(47255060-47255123)
chr7 (98-132)||(21066915-21066949)
chr7 (98-135)||(27424868-27424905)
chr7 (98-130)||(15074911-15074943)
chr7 (104-140)||(25711158-25711194)
[»] chr5 (3 HSPs)
chr5 (98-161)||(39919071-39919134)
chr5 (98-132)||(12891586-12891620)
chr5 (98-132)||(26912862-26912896)
[»] chr4 (4 HSPs)
chr4 (98-141)||(15208551-15208594)
chr4 (98-144)||(19963811-19963857)
chr4 (98-132)||(33530822-33530856)
chr4 (98-131)||(42395256-42395289)
[»] chr2 (6 HSPs)
chr2 (98-161)||(38179223-38179286)
chr2 (98-140)||(1844846-1844888)
chr2 (101-151)||(20528163-20528213)
chr2 (98-132)||(44948625-44948659)
chr2 (100-132)||(32084873-32084905)
chr2 (104-140)||(32288408-32288444)
[»] chr1 (5 HSPs)
chr1 (98-141)||(14349673-14349716)
chr1 (98-132)||(33033155-33033189)
chr1 (98-132)||(42054362-42054396)
chr1 (100-141)||(35195637-35195678)
chr1 (104-132)||(24168614-24168642)
[»] chr8 (3 HSPs)
chr8 (98-144)||(13773387-13773433)
chr8 (98-135)||(43656065-43656102)
chr8 (97-141)||(14876600-14876644)
[»] chr6 (1 HSPs)
chr6 (98-131)||(14709028-14709061)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45268968 - 45268809
Alignment:
Q  1 tagctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgacagtcacattaaaagtgattaaatgatttctaatgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  45268968 tagctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgaaagtcacattaaaagtgattaaatgatttccaatgaatt 45268869  T
Q  101 gcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 161  Q
    |||||||||||| || |||| ||||||||||||| | |||| |||||||||||| ||||||    
T  45268868 gcatattatatgcagagacc-gggttcgaacctcatgcactccatatttaaattatgtgag 45268809  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 5641655 - 5641613
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacac 140  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  5641655 attgcatattatatgcaggggccggggttcgaacctcggacac 5641613  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 48546202 - 48546236
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    ||||||||||||||||||||| |||||||||||||    
T  48546202 attgcatattatatgtagggatcggggttcgaacc 48546236  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 53163623 - 53163657
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  53163623 attgcatattatatgtaggggccggggttcgaacc 53163657  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 8125668 - 8125700
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaa 130  Q
    ||||||||||||||| |||||||||||||||||    
T  8125668 attgcatattatatgcagggaccggggttcgaa 8125700  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 29373490 - 29373454
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctc 134  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  29373490 attgcatattatatgcaggggccggggttcgaacctc 29373454  T

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Target: scaffold1787 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 429 - 472
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||    
T  429 attgcatattatatgcaggggccggggttcgaacctcggacact 472  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 14204301 - 14204344
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    |||||||||||||||||||| | ||||||||||||||| |||||    
T  14204301 attgcatattatatgtaggggctggggttcgaacctcggacact 14204344  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 21388552 - 21388615
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 161  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  21388552 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 21388615  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 47255123 - 47255060
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 161  Q
    |||||||||||| || |||  |||||||||||||| || |||||||| | ||||||||||||||    
T  47255123 attgcatattatctgcaggagccggggttcgaaccccggacacttcacaattaaattgtgtgag 47255060  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 21066915 - 21066949
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  21066915 attgcatattatatgtaggggccggggttcgaacc 21066949  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 27424868 - 27424905
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcg 135  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  27424868 attgcatattatatgcaggggccggggttcgaacctcg 27424905  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 15074943 - 15074911
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaa 130  Q
    ||||||||||||||| |||||||||||||||||    
T  15074943 attgcatattatatgcagggaccggggttcgaa 15074911  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 25711194 - 25711158
Alignment:
Q  104 tattatatgtagggaccggggttcgaacctcgtacac 140  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  25711194 tattatatgtaggggccggggttcgaacctcggacac 25711158  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 39919134 - 39919071
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 161  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  39919134 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 39919071  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 12891586 - 12891620
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  12891586 attgcatattatatgtaggggccggggttcgaacc 12891620  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 26912862 - 26912896
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  26912862 attgcatattatatgtaggggccggggttcgaacc 26912896  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 15208551 - 15208594
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    |||||||||||||| |||| |||||||||||||||||| |||||    
T  15208551 attgcatattatatataggaaccggggttcgaacctcggacact 15208594  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 19963811 - 19963857
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 144  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  19963811 attgcatattatatgcaggggtcggggttcgaacctcggacacttca 19963857  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 33530822 - 33530856
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    ||||||||||||||||||||| |||||||||||||    
T  33530822 attgcatattatatgtagggatcggggttcgaacc 33530856  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 42395256 - 42395289
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaac 131  Q
    |||||||||||||||||||| |||||||||||||    
T  42395256 attgcatattatatgtaggggccggggttcgaac 42395289  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 38179286 - 38179223
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 161  Q
    ||||||| ||||||| |||| | ||||||||||||||| ||||| || | ||||||||||||||    
T  38179286 attgcattttatatgcaggggctggggttcgaacctcggacactccacaattaaattgtgtgag 38179223  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 1844846 - 1844888
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacac 140  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  1844846 attgcatattatatgcaggggccggggttcgaacctcggacac 1844888  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 20528213 - 20528163
Alignment:
Q  101 gcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaa 151  Q
    |||| |||||||||||||| ||||||||||||||  |||||||| ||||||    
T  20528213 gcatgttatatgtagggactggggttcgaacctcagacacttcacatttaa 20528163  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 44948625 - 44948659
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    ||||||||||||||| |||||||||||||||||||    
T  44948625 attgcatattatatgcagggaccggggttcgaacc 44948659  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 32084873 - 32084905
Alignment:
Q  100 tgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||| ||||||||||||||    
T  32084873 tgcatattatatgtaggggccggggttcgaacc 32084905  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 32288408 - 32288444
Alignment:
Q  104 tattatatgtagggaccggggttcgaacctcgtacac 140  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  32288408 tattatatgtagggatcggggttcgaacctcggacac 32288444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 14349673 - 14349716
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    ||||||||||||||||||||| ||||||||||||| || |||||    
T  14349673 attgcatattatatgtagggatcggggttcgaaccccggacact 14349716  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 33033155 - 33033189
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    ||||||||||||||| |||||||||||||||||||    
T  33033155 attgcatattatatgcagggaccggggttcgaacc 33033189  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 42054362 - 42054396
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  42054362 attgcatattatatgtaggggccggggttcgaacc 42054396  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 35195678 - 35195637
Alignment:
Q  100 tgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||    
T  35195678 tgcatattatatgcagggaccagggttcgaaccccgtacact 35195637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 24168642 - 24168614
Alignment:
Q  104 tattatatgtagggaccggggttcgaacc 132  Q
    |||||||||||||||||||||||||||||    
T  24168642 tattatatgtagggaccggggttcgaacc 24168614  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 13773433 - 13773387
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 144  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||    
T  13773433 attgcatattatatgtaggagccggggttcgaaccccggacacttca 13773387  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 43656065 - 43656102
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaacctcg 135  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  43656065 attgcatattatatgtaggggtcggggttcgaacctcg 43656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 14876644 - 14876600
Alignment:
Q  97 aattgcatattatatgtagggaccggggttcgaacctcgtacact 141  Q
    |||||||||||||||| |||  ||||||||||||||||| |||||    
T  14876644 aattgcatattatatgcaggagccggggttcgaacctcggacact 14876600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 14709061 - 14709028
Alignment:
Q  98 attgcatattatatgtagggaccggggttcgaac 131  Q
    |||||||||||||||||||| |||||||||||||    
T  14709061 attgcatattatatgtaggggccggggttcgaac 14709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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