View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_88 (Length: 219)
Name: NF17080_low_88
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 31863251 - 31863441
Alignment:
| Q |
12 |
agtagcaaaggtatcccatcaatataaatctacaactt-gatttacattcannnnnnn-attatatactaatattcagttcttaatttatccttagcatg |
109 |
Q |
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| T |
31863251 |
agtaccaaaggtatcccatcaatataaatctacagctttgatttacattcattttttttattatatactaatattcagttcttaatttatccttagcatg |
31863350 |
T |
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| Q |
110 |
gatcctttatggtagaacaatgtatttattcttgtttacatacgaacatatatatttcatggattaaaactataatttatttatttatttt |
200 |
Q |
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| T |
31863351 |
aatcctttatggtagaacaatgtatttattcttgtttacatacgaacatatatatttcatggattaaaactataatttttttatttatttt |
31863441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 31929436 - 31929608
Alignment:
| Q |
12 |
agtagcaaaggtatcccatcaatataaatctacaacttgatttacattcannnnnnnattatatactaatattcagttcttaatttatccttagcatgga |
111 |
Q |
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| T |
31929436 |
agtaccaaaggtataccttcaatataaatctgcaacttaatttacattcattt----attatatacatatatgcaattcttaatttatccttagcatgga |
31929531 |
T |
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| Q |
112 |
tcctttatggtagaacaatgta-tttattcttgtttacatacgaacatatatatttcatggattaaaactataattt |
187 |
Q |
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| T |
31929532 |
tcctttatggtagaacaatgtattttattctcgtttacatacaaacatatatatttcatggatctaaattataattt |
31929608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 31897478 - 31897635
Alignment:
| Q |
12 |
agtagcaaaggtatcccatcaatataaatctacaacttgatttacattcannnnnnnattatatactaatattcagttcttaatttatccttagcatgga |
111 |
Q |
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|||| ||||||||| | || |||||||||| |||||||||||||||||| |||||||||| |||| || ||||||| |||||||||||||||| |
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| T |
31897478 |
agtaccaaaggtatacattcgatataaatctgcaacttgatttacattcattt----attatatacttatatccaattcttaaattatccttagcatgga |
31897573 |
T |
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| Q |
112 |
tcctttatggtagaacaatgtatttattcttgtttacatacgaacatatatatttcatggat |
173 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
31897574 |
tcctttgtggtagaacaatgtatttattcttgtttacatacaaacatatgtatttcatggat |
31897635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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