View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_9 (Length: 542)
Name: NF17080_low_9
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 28813728 - 28813235
Alignment:
| Q |
17 |
aaaatcagtccactacaaacaagttaagaaggggaagaatatcaactacagaac-atgaattctg-------------------cccatttccaaagtaa |
96 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
28813728 |
aaaatcagtccactacaaacaagtcaagaaggggaagaatatcaactacagaaccatgaattctgctttttaccaaatattctgctcattcttaaagtaa |
28813629 |
T |
|
| Q |
97 |
atgttcatattgcccccgcgtgagttaacttgcgacttacgctagtttcattcttacacttgacagcagctttcaaacatttctgtcttacactctcctg |
196 |
Q |
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|||| |||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813628 |
atgtccatattacctccgcatgagttaacttgcgactcacgctagtttcattcttacacttgacagcagctttcaaacatttctgtcttacactctcctg |
28813529 |
T |
|
| Q |
197 |
cttctcatgttcttcttcttcctctctcatcttgaaactggaatcgaaatcattctctccaacctagaccagcatcctctcccatcaatcaagaaattaa |
296 |
Q |
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|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28813528 |
cttctcatgttcatcttcttcctctctcaccttgaaactggaatcgaaatcattctctccaacctagaccagcatcctctccaatcaatcaagaaattaa |
28813429 |
T |
|
| Q |
297 |
atgtttcatttaactaatttatgagaaattcagtcacaattttaannnnnnngaaagtttcacaaatccttgaaacccctcagacaaattttgcgtcttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813428 |
atgtttcatttaactaatttatgagaaattcagtcacaattttaatttttttgaaagtttcacaaatccttgaaacccctcagacaaattttgcgtcttt |
28813329 |
T |
|
| Q |
397 |
taggaactgaagcaaaacccatcattgaagatgcaaaccccatcattgaactaattaacaaactaaaattgaaacagatcaaaggaagaacgtg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28813328 |
taggaactgaagcaaaacccatcattgaagatgcaaaccccatcattgaactaattaacaaactaaaattgaaacagatcaaaggaagaacgtg |
28813235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 9539125 - 9539079
Alignment:
| Q |
83 |
catttccaaagtaaatgttcatattgcccccgcgtgagttaacttgc |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
9539125 |
cattcccaaagtaaatgttcatattgcccctgcataagttaacttgc |
9539079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 17797054 - 17797016
Alignment:
| Q |
88 |
ccaaagtaaatgttcatattgcccccgcgtgagttaact |
126 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
17797054 |
ccaaagtaaatgtccatattgcccctgcgtgagttaact |
17797016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 38147112 - 38147072
Alignment:
| Q |
90 |
aaagtaaatgttcatattgcccccgcgtgagttaacttgcg |
130 |
Q |
| |
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|||||||||||||||||| || | ||||||||||||||||| |
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|
| T |
38147112 |
aaagtaaatgttcatattacctctgcgtgagttaacttgcg |
38147072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 38225767 - 38225807
Alignment:
| Q |
90 |
aaagtaaatgttcatattgcccccgcgtgagttaacttgcg |
130 |
Q |
| |
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||||||||||||||||||| | | ||||||||||||||||| |
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|
| T |
38225767 |
aaagtaaatgttcatattgtctctgcgtgagttaacttgcg |
38225807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 37576576 - 37576621
Alignment:
| Q |
85 |
tttccaaagtaaatgttcatattgcccccgcgtgagttaacttgcg |
130 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||||||||||||| |
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|
| T |
37576576 |
tttccaaagtaaatgtccatattacccctacgtgagttaacttgcg |
37576621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 42883146 - 42883182
Alignment:
| Q |
90 |
aaagtaaatgttcatattgcccccgcgtgagttaact |
126 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||| |
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| T |
42883146 |
aaagtaaatgttcatattgtccctgcgtgagttaact |
42883182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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