View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_94 (Length: 204)
Name: NF17080_low_94
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_94 |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold1408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 33303892 - 33303712
Alignment:
| Q |
16 |
caagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33303892 |
caagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacag |
33303793 |
T |
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| Q |
116 |
atagatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatctgcaatgaagagcattgacatgatgttcatctc |
196 |
Q |
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| T |
33303792 |
atggatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatctgcaatgaagagcattgacattatgttcatctc |
33303712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 33262012 - 33261922
Alignment:
| Q |
17 |
aagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaa |
105 |
Q |
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|||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
33262012 |
aagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa |
33261922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 33398460 - 33398336
Alignment:
| Q |
24 |
tggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacaga--gaagaaacaacagatag |
119 |
Q |
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| T |
33398460 |
tggcaattgaaggcgagacacaaccacaacc------agaacaagaatcattcatctcacaagtcataactacttcgaagaaggaagaaacaacagatgg |
33398367 |
T |
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| Q |
120 |
atcacaagaaggtgatgaagagtctcaacct |
150 |
Q |
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| T |
33398366 |
atcacaagaaggtcacgaagagtttcaacct |
33398336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 33409372 - 33409248
Alignment:
| Q |
24 |
tggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacaga--gaagaaacaacagatag |
119 |
Q |
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|||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| | |
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| T |
33409372 |
tggcaattgaaggcgagacacaaccacaacc------agaacaagaatcattcatctcacaagtcataactacttcgaagaaagaagaaacaacagatgg |
33409279 |
T |
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| Q |
120 |
atcacaagaaggtgatgaagagtctcaacct |
150 |
Q |
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| T |
33409278 |
atcacaagaaggtcaagaagagtttcaacct |
33409248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31563408 - 31563483
Alignment:
| Q |
17 |
aagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa |
92 |
Q |
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||||||||||||||||||||||||||||||||| ||| | || ||||||| |||| ||||||||| |||||||| |
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| T |
31563408 |
aagaatttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataa |
31563483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 33358286 - 33358226
Alignment:
| Q |
51 |
aaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa |
109 |
Q |
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||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
33358286 |
aaccgcaactagaacaagaatcattcatctcacaagtcataattacttcacagagaagaaa |
33358226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 33056968 - 33056935
Alignment:
| Q |
22 |
tttggcaattgaagatgagacacaaccagaaccg |
55 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
33056968 |
tttgacaattgaagatgagacacaaccagaaccg |
33056935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 5785 - 5691
Alignment:
| Q |
17 |
aagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa |
109 |
Q |
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|||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
5785 |
aagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaagaaa |
5691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 17441501 - 17441538
Alignment:
| Q |
16 |
caagaatttggcaattgaagatgagacacaaccagaac |
53 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
17441501 |
caagattttggcaattgaagatgagacacaaccagaac |
17441538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 39 - 2
Alignment:
| Q |
17 |
aagaatttggcaattgaagatgagacacaaccagaacc |
54 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |
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| T |
39 |
aagattttggcaattgaagatgagacacaaccacaacc |
2 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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