View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_10 (Length: 486)
Name: NF17081_high_10
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 91 - 480
Target Start/End: Complemental strand, 30350392 - 30350003
Alignment:
| Q |
91 |
ccccccaaattgaaagagtcaagatacaaggtccactacatttacaacaaccacatgtagttcactatcactaagaattgaactaagaaaaccaattttt |
190 |
Q |
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| T |
30350392 |
ccccccgaattgaaagagtcaagatacaaggtccactacatttacaacaaccacatgtagttcactatcactaagaattgaactaagaaaaccaattttt |
30350293 |
T |
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| Q |
191 |
ctcttacctttcatatataccatattggaaatttctaaattgatcaaactcacctaatgtatgacatttactttttgtcatcaaatcatgcacttaacat |
290 |
Q |
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| T |
30350292 |
ctcttacctttcatatataccatattggaaatttctaaattgatcaaactcacctaatgtatgacatttactttttgtcatcaaatcatgcacttaacat |
30350193 |
T |
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| Q |
291 |
gaggcaagaaccttagcaactttcctacatcattcttaatatattttctctccctctctcactctcttttatttcaacacttagactcaatcaagtcctt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350192 |
gaggcaagaaccttagcaactttcctacatcattcttaatatattttctctccctctctcactctcttttatttcaacacttagactcaatcaagtcctt |
30350093 |
T |
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| Q |
391 |
gctactcaagagaatggcttctccaactcaaaatttgaggattcaaaaggctacaatagtgttactcattatatgtatttcattttcttc |
480 |
Q |
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| T |
30350092 |
gctactcaagagaatggcttctccaactcaaaatttgaggattcaaaaggctacaatagtgttactcattatatgtatttcattttcttc |
30350003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 30350491 - 30350412
Alignment:
| Q |
17 |
aacctatctacaaaagatgagattttctcactaaactctccagaaactgctgcaaaattgaacttatttctacacccccc |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30350491 |
aacctatctacaaaagatgagattttctcactaaactctccagaaactgctgcaaaattgaacttatttctacccccccc |
30350412 |
T |
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