View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_14 (Length: 470)
Name: NF17081_high_14
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 757792 - 758244
Alignment:
| Q |
1 |
aacaacactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757792 |
aacaacactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatata |
757891 |
T |
|
| Q |
101 |
cttacaccgtgatcccctaaaacaataaactctggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaag |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
757892 |
cttacaccgtgatcccttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaag |
757991 |
T |
|
| Q |
201 |
tacataatgatataaacaaagttcaatgcaacattaatttgtc-nnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactcagactta |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757992 |
tacataatgatataaacaaagttcaatgcaacattaatttatcaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagactta |
758091 |
T |
|
| Q |
300 |
aaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758092 |
aaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacatt |
758191 |
T |
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| Q |
400 |
ttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
452 |
Q |
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| T |
758192 |
ttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
758244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 36989584 - 36989127
Alignment:
| Q |
1 |
aacaacactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989584 |
aacatcactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatata |
36989485 |
T |
|
| Q |
101 |
cttacaccgtgatcccctaaaacaataaactctggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaag |
200 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989484 |
cttacaccgtgatcccttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaag |
36989385 |
T |
|
| Q |
201 |
tacataatgatataaacaaagttcaatgcaacattaatttgt------cnnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactcag |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36989384 |
tacataatgatataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcag |
36989285 |
T |
|
| Q |
295 |
acttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989284 |
acttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggc |
36989185 |
T |
|
| Q |
395 |
acattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
452 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989184 |
acattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
36989127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 37015024 - 37014566
Alignment:
| Q |
1 |
aacaacactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtataca-tggaaggcaaacaaaaacatgacttcatgtgacatatat |
99 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
37015024 |
aacagcactgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacaattgaaggcaaacaaaaacatgacttcatgtgacatatat |
37014925 |
T |
|
| Q |
100 |
acttacaccgtgatcccctaaaacaataaactctggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaa |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014924 |
acttacaccgtgatcccctaaaacaataaactgtggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaa |
37014825 |
T |
|
| Q |
200 |
gtacataatgatataaacaaagttcaatgcaacattaatttgt------cnnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactca |
293 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37014824 |
gtacataatgatataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactca |
37014725 |
T |
|
| Q |
294 |
gacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttaggg |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014724 |
gacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttaggg |
37014625 |
T |
|
| Q |
394 |
cacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
452 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014624 |
cacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttga |
37014566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 32898595 - 32898567
Alignment:
| Q |
78 |
catgacttcatgtgacatatatacttaca |
106 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32898595 |
catgacttcatgtgacatatatacttaca |
32898567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 19179994 - 19180126
Alignment:
| Q |
8 |
ctgaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||| ||||||| ||| ||||| |||||||||| ||||| |
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|
| T |
19179994 |
ctgaaatcaagcaaaaaccattgttgttattggagaaataataacagtatagtttgaaggcaaagaaaaacacgacctcatgcgacatatatagttacat |
19180093 |
T |
|
| Q |
108 |
cgtgatcccctaaaacaataaactctggaccaa |
140 |
Q |
| |
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||||||| |||| || | ||||| |||||||| |
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| T |
19180094 |
cgtgatctcctataaaatgaaactgtggaccaa |
19180126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 19180800 - 19180863
Alignment:
| Q |
392 |
ggcacattttggtacctaaaattgaaat---ggaatcttttgtaagaaactttaattaacttga |
452 |
Q |
| |
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|||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
19180800 |
ggcacattttggtaactaagattgaaatattggaagcttttgtaagaaactttaattaacttga |
19180863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 19180180 - 19180230
Alignment:
| Q |
154 |
actcacagtatataaatcaaaatgattaaatgtttcatatgattaagtacat |
205 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
19180180 |
actcacagtatataaatcaaa-tgattaaatgtttgatatgataaagtacat |
19180230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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