View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17081_high_21 (Length: 397)
Name: NF17081_high_21
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 32954071 - 32954442
Alignment:
| Q |
14 |
caagaaccttatagctactactcctatataataacaccatacacattccattacttctattctcttctcttctcttcaatggattctaatactttctcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954071 |
caagaaccttatagctactactcctatataataacaccatacacattccattacttctattctcttctcttctcttcaatggattctaatactttctcca |
32954170 |
T |
|
| Q |
114 |
tgcattcacattgtgtacaaattgaaatacaccaagttgttccaccacctcacaaaagcaccttacaaaaattcaaagttaggctcaaggaaactttttt |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954171 |
tgcattcacattgtgtacaaatggaaatacaccaagttgttccaccacctcacaaaagcaccttacaaaaattcaaagttaggctcaaggaaactttttt |
32954270 |
T |
|
| Q |
214 |
ccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattcttcaatggggttctatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954271 |
ccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattcttcaatggggttctatt |
32954370 |
T |
|
| Q |
314 |
tatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954371 |
tatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
32954442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 385
Target Start/End: Original strand, 32965507 - 32965694
Alignment:
| Q |
198 |
tcaaggaaacttttttccctgatgatcctttacgccaattcaaaggacaaacacttcaaaaaagactaatcttaggagctaaatattttttccctattct |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || |||||||| |||||| || | | | || | ||||| | |||||| |||||||||| |||||||| |
|
|
| T |
32965507 |
tcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaatatttttttcctattct |
32965606 |
T |
|
| Q |
298 |
tcaatggggttctatttatagcttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
385 |
Q |
| |
|
||| ||| ||| ||| | ||||||||| ||||| |||||||| | ||||| ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
32965607 |
tcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcaggtt |
32965694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University