View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_high_23 (Length: 385)

Name: NF17081_high_23
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_high_23
NF17081_high_23
[»] chr5 (7 HSPs)
chr5 (142-385)||(31373385-31373627)
chr5 (177-385)||(31325972-31326180)
chr5 (177-337)||(31382773-31382933)
chr5 (35-139)||(42786082-42786186)
chr5 (35-138)||(5518975-5519078)
chr5 (17-138)||(27197780-27197902)
chr5 (64-136)||(15599462-15599535)
[»] chr3 (7 HSPs)
chr3 (13-138)||(5705065-5705190)
chr3 (22-138)||(7688425-7688541)
chr3 (24-138)||(19435597-19435710)
chr3 (17-138)||(28104392-28104514)
chr3 (17-138)||(28058009-28058131)
chr3 (17-138)||(28068434-28068556)
chr3 (69-117)||(11201241-11201289)
[»] chr2 (6 HSPs)
chr2 (17-138)||(10416520-10416641)
chr2 (18-138)||(4698477-4698597)
chr2 (35-138)||(808177-808280)
chr2 (24-138)||(2588420-2588533)
chr2 (70-139)||(44324742-44324811)
chr2 (68-138)||(45333308-45333377)
[»] chr1 (10 HSPs)
chr1 (17-138)||(16104778-16104899)
chr1 (17-138)||(16101322-16101443)
chr1 (17-138)||(19656889-19657010)
chr1 (17-138)||(14650847-14650969)
chr1 (17-138)||(14654847-14654969)
chr1 (17-138)||(14660638-14660760)
chr1 (32-138)||(29287704-29287809)
chr1 (17-138)||(17478215-17478336)
chr1 (70-139)||(17652806-17652875)
chr1 (64-139)||(47050058-47050133)
[»] chr6 (10 HSPs)
chr6 (17-138)||(33063689-33063810)
chr6 (17-126)||(30130916-30131025)
chr6 (17-139)||(27527824-27527947)
chr6 (17-139)||(33056210-33056335)
chr6 (33-139)||(28041304-28041409)
chr6 (24-129)||(15969961-15970066)
chr6 (70-139)||(22014634-22014703)
chr6 (64-138)||(25477665-25477738)
chr6 (18-135)||(6952786-6952903)
chr6 (68-117)||(14011684-14011733)
[»] chr4 (6 HSPs)
chr4 (31-138)||(5358103-5358210)
chr4 (18-135)||(30873893-30874010)
chr4 (44-139)||(18693729-18693823)
chr4 (32-138)||(27560628-27560733)
chr4 (44-138)||(51534234-51534327)
chr4 (68-139)||(27732945-27733015)
[»] chr8 (4 HSPs)
chr8 (31-138)||(28602614-28602721)
chr8 (35-139)||(4706150-4706254)
chr8 (31-138)||(15925528-15925635)
chr8 (68-138)||(18983071-18983140)
[»] chr7 (3 HSPs)
chr7 (17-138)||(28804133-28804254)
chr7 (17-138)||(26525371-26525492)
chr7 (68-117)||(36263729-36263778)
[»] scaffold0002 (3 HSPs)
scaffold0002 (46-138)||(10306-10398)
scaffold0002 (17-136)||(406455-406574)
scaffold0002 (17-136)||(423827-423945)
[»] scaffold0713 (1 HSPs)
scaffold0713 (17-127)||(1289-1399)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-138)||(115263-115384)
[»] scaffold0654 (2 HSPs)
scaffold0654 (19-138)||(3958-4077)
scaffold0654 (19-138)||(5310-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (38-138)||(4129-4227)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-138)||(233054-233174)
[»] scaffold0016 (1 HSPs)
scaffold0016 (71-138)||(76583-76650)
[»] scaffold0007 (1 HSPs)
scaffold0007 (70-118)||(61210-61258)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 142 - 385
Target Start/End: Original strand, 31373385 - 31373627
Alignment:
Q  142 tgggagactgcaattcgaagcaaaaactgaagcgaaaaaacatctccccaacttgggtagacgcaattgggcgaatgtgggtgtctcagctaggcaattt 241  Q
    |||||||||  ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31373385 tgggagactaaaattcgaagcaaaaattgaagcgaaaa-acatctccccaactttggtagacgcaattgggcgaatgtgggtgtctcagctaggcaattt 31373483  T
Q  242 gaatagatgtttgctagccttattacaaaattaatttctgaagtgttaaagctatctatggatatctcttgttgatatagattacgtcattttggaatgt 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31373484 gaatagatgtttgctagccttattacaaaattaatttctgaagtgttatagctatctatggatatctcttgttgatatagattatgtcattttggaatgt 31373583  T
Q  342 ttggacatgttgtatgtgatgagtaacactaggtgtgtgcaaca 385  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  31373584 ttggacatgttgtatgtgatgaataacactaggtgtgtgcaaca 31373627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 177 - 385
Target Start/End: Original strand, 31325972 - 31326180
Alignment:
Q  177 aaaaacatctccccaacttgggtagacgcaattgggcgaatgtgggtgtctcagctaggcaatttgaatagatgtttgctagccttattacaaaattaat 276  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  31325972 aaaaacatctccccaactttggtagacgcaattgggcgaatgtgggtgtctcaactaggcaatttgaatagatgtttgctagccttattacaaaatttat 31326071  T
Q  277 ttctgaagtgttaaagctatctatggatatctcttgttgatatagattacgtcattttggaatgtttggacatgttgtatgtgatgagtaacactaggtg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31326072 ttctgaagtgttaaagctatctatggatatctcttgttgatatagattatgtcattttggaatgtttggacatgttgtatgtgatgaataacactaggtg 31326171  T
Q  377 tgtgcaaca 385  Q
    |||||||||    
T  31326172 tgtgcaaca 31326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 31382773 - 31382933
Alignment:
Q  177 aaaaacatctccccaacttgggtagacgcaattgggcgaatgtgggtgtctcagctaggcaatttgaatagatgtttgctagccttattacaaaatta-a 275  Q
    |||||||||||||||| || || |||| ||||||| |||||||||||||||| |||||| || |||||||| ||||| |||||||||||| ||||||| |    
T  31382773 aaaaacatctccccaaatttggcagacacaattggtcgaatgtgggtgtctcggctagggaa-ttgaataggtgttttctagccttattataaaattaga 31382871  T
Q  276 tttctgaagtgttaaagctatctatggatatctcttgttgatatagattacgtcattttgga 337  Q
    ||  |||||||||||||  |||||||||||||||| |||||||||||| | |||| ||||||    
T  31382872 ttcatgaagtgttaaaggaatctatggatatctctggttgatatagatcatgtcagtttgga 31382933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 42786082 - 42786186
Alignment:
Q  35 aaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgt 134  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||  | |||||||||||||    
T  42786082 aaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattttgggtcgt 42786181  T
Q  135 gacat 139  Q
    |||||    
T  42786182 gacat 42786186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 5519078 - 5518975
Alignment:
Q  35 aaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgt 134  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||  ||||||||||||||||||||||  |||||||||||||||    
T  5519078 aaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgt 5518979  T
Q  135 gaca 138  Q
    ||||    
T  5518978 gaca 5518975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 27197902 - 27197780
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| ||| |||||| |||| |||||||||||||| | || |||| ||| ||||||| ||||||||||  |||||||||||||| ||||||    
T  27197902 taagtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtgcgccgatcacga 27197803  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
    |  |||| |||||||||||||||    
T  27197802 ttgtgaatttttgggtcgtgaca 27197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 15599462 - 15599535
Alignment:
Q  64 gtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattga-attttgggtcgtga 136  Q
    ||||||||||||||||||| ||||||||||  ||||||||||| | |||||||| ||||  |||||||||||||    
T  15599462 gtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgattttgagtttttgggtcgtga 15599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 5705190 - 5705065
Alignment:
Q  13 attctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5705190 attctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccggtc 5705091  T
Q  113 acgatattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||||||    
T  5705090 acgatattgaattttgggtcgtgaca 5705065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 7688541 - 7688425
Alignment:
Q  22 gaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattg 121  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  7688541 gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattg 7688442  T
Q  122 aattttgggtcgtgaca 138  Q
    |||||| ||||||||||    
T  7688441 aattttaggtcgtgaca 7688425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 19435597 - 19435710
Alignment:
Q  24 aagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaa 123  Q
    ||||||| |||||||||||||||||||||||| |||| | ||||||||||| |||| |||| ||| ||||  ||||||||||||||||||||||  ||||    
T  19435597 aagtcagattgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaa 19435695  T
Q  124 ttttgggtcgtgaca 138  Q
    |||||||||||||||    
T  19435696 ttttgggtcgtgaca 19435710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 28104392 - 28104514
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| ||||||| || | ||||||||||||||||| | ||||||| ||||||||||||||||||||||  |||||| ||||||||||||||    
T  28104392 taagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatgcgccggtcacga 28104491  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
       |||| |||||||||||||||    
T  28104492 atgtgaatttttgggtcgtgaca 28104514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 28058131 - 28058009
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||| | ||||||| || | |||||||||||||||||   || || | ||||||||||||||||||||||  ||||||||||||||||||| |    
T  28058131 taagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaa 28058032  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
       |||| |||||||||||||||    
T  28058031 atgtgaatttttgggtcgtgaca 28058009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 28068556 - 28068434
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||| | ||||||| || | |||||||||||||||||   || || | ||||||||||||||||||||||  ||||||||||||||||||| |    
T  28068556 taagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaa 28068457  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
       |||| |||||||||||||||    
T  28068456 atgtgaatttttgggtcgtgaca 28068434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 11201241 - 11201289
Alignment:
Q  69 caataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    ||||||||||||||| |||| ||||  |||||||||||||| |||||||    
T  11201241 caataggcttgccgggctagaatgttctagttcgtgcgccgatcacgat 11201289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 10416520 - 10416641
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  10416520 taagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 10416619  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||    
T  10416620 tattgaattttgggtcgtgaca 10416641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 4698477 - 4698597
Alignment:
Q  18 aagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||  |||||| ||||||||||||||     
T  4698477 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatgcgccggtcacgaa 4698576  T
Q  118 attgaattttgggtcgtgaca 138  Q
    |||||||||||||||||||||    
T  4698577 attgaattttgggtcgtgaca 4698597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 808280 - 808177
Alignment:
Q  35 aaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgt 134  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||    
T  808280 aaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgt 808181  T
Q  135 gaca 138  Q
    ||||    
T  808180 gaca 808177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 2588420 - 2588533
Alignment:
Q  24 aagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaa 123  Q
    ||||||| |||||||||||||||| ||||||| | || | ||||||||||||||||||||||||||||||  |||||||||||||| |||||||  ||||    
T  2588420 aagtcagattgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaa 2588518  T
Q  124 ttttgggtcgtgaca 138  Q
    |||||||||||||||    
T  2588519 ttttgggtcgtgaca 2588533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 44324742 - 44324811
Alignment:
Q  70 aataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||||||    
T  44324742 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 44324811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 45333308 - 45333377
Alignment:
Q  68 tcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||||||| | |  |||||||||||||||    
T  45333308 tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacgat-tagtgttttgggtcgtgaca 45333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 16104778 - 16104899
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  16104778 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 16104877  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||    
T  16104878 tattgaattttgggtcgtgaca 16104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 16101322 - 16101443
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  16101322 taagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 16101421  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||    
T  16101422 tattgaattttgggtcgtgaca 16101443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 19657010 - 19656889
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||| | |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  19657010 taagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacga 19656911  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    |||||||| |||||||||||||    
T  19656910 tattgaatcttgggtcgtgaca 19656889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 14650847 - 14650969
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| | || |||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  14650847 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14650946  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
    |  |||| |||||||||||||||    
T  14650947 ttgtgaatttttgggtcgtgaca 14650969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 14654847 - 14654969
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| | || |||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  14654847 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14654946  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
    |  |||| |||||||||||||||    
T  14654947 ttgtgaatttttgggtcgtgaca 14654969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 14660638 - 14660760
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| | || |||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  14660638 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacga 14660737  T
Q  117 tattgaa-ttttgggtcgtgaca 138  Q
    |  |||| |||||||||||||||    
T  14660738 ttgtgaatttttgggtcgtgaca 14660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 29287809 - 29287704
Alignment:
Q  32 ttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggt 131  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||    
T  29287809 ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaattttgggt 29287711  T
Q  132 cgtgaca 138  Q
    |||||||    
T  29287710 cgtgaca 29287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 17478336 - 17478215
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||| ||| ||||| ||||||||||||||| | || |||||| ||||||||| ||||||||||  |||||||||||||||||||||    
T  17478336 taagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccggtcacga 17478237  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    |  |||||||||||||||||||    
T  17478236 ttgtgaattttgggtcgtgaca 17478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 17652875 - 17652806
Alignment:
Q  70 aataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||||||    
T  17652875 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 17652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 47050133 - 47050058
Alignment:
Q  64 gtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||| ||||| |||||||||||||  ||||| ||||||| |||||| |  ||||||||||||||||||||    
T  47050133 gtcgtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtcgtgacat 47050058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 33063689 - 33063810
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||   |||||||| ||||||||| ||    
T  33063689 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgtacgccggtcatga 33063788  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||    
T  33063789 tattgaattttgggtcgtgaca 33063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 30130916 - 30131025
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |   |||||||||||||| ||||||    
T  30130916 taagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgatcacga 30131015  T
Q  117 tattgaattt 126  Q
     |||||||||    
T  30131016 aattgaattt 30131025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 27527824 - 27527947
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| | || |||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  27527824 taagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgtcggtcacga 27527923  T
Q  117 tattgaa-ttttgggtcgtgacat 139  Q
    |  |||| ||||||||||||||||    
T  27527924 ttgtgaatttttgggtcgtgacat 27527947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 33056210 - 33056335
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatg---ggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtca 113  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |    ||||||||||||||| |||||||||| |    ||||||||||||||||||    
T  33056210 taagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagttcgtgcgccggtca 33056309  T
Q  114 cgatattgaattttgggtcgtgacat 139  Q
    ||||||||||||||||||| ||||||    
T  33056310 cgatattgaattttgggtcttgacat 33056335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 28041304 - 28041409
Alignment:
Q  33 tgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtc 132  Q
    ||||||||||||||||||||||| | || | |||||||||| |||| ||| ||||||||||  ||||||||||||||||||||||  |||||||||||||    
T  28041304 tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc 28041402  T
Q  133 gtgacat 139  Q
    |||||||    
T  28041403 gtgacat 28041409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
Q  24 aagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaa 123  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||| ||| |||||||| ||| |||||  || |||||||||||||||||||  ||||    
T  15970066 aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaa 15969967  T
Q  124 ttttgg 129  Q
    ||||||    
T  15969966 ttttgg 15969961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 22014634 - 22014703
Alignment:
Q  70 aataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||||||    
T  22014634 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 22014703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 25477738 - 25477665
Alignment:
Q  64 gtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||  |||| ||||||||||||||    
T  25477738 gtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgaca 25477665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 6952786 - 6952903
Alignment:
Q  18 aagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    |||||||||| | ||| ||||||||||||||||||||||| || | |||||||||| ||||| |  |||||| |||  ||||| |||| ||||||| |||    
T  6952786 aagtgaaagttaatttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggat 6952885  T
Q  118 attgaattttgggtcgtg 135  Q
     || ||||||||||||||    
T  6952886 tttaaattttgggtcgtg 6952903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 14011684 - 14011733
Alignment:
Q  68 tcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    |||||||||||||||| |||| ||||  |||||||||||||| |||||||    
T  14011684 tcaataggcttgccgggctagaatgttctagttcgtgcgccgatcacgat 14011733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 5358210 - 5358103
Alignment:
Q  31 tttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttggg 130  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||  ||||||||    
T  5358210 tttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattttagattttggg 5358111  T
Q  131 tcgtgaca 138  Q
    ||||||||    
T  5358110 tcgtgaca 5358103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 30874010 - 30873893
Alignment:
Q  18 aagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    ||||||| |||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||  ||||| ||||||||||||||||    
T  30874010 aagtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgat 30873911  T
Q  118 attgaattttgggtcgtg 135  Q
     |||||||||||| ||||    
T  30873910 tttgaattttgggccgtg 30873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 18693823 - 18693729
Alignment:
Q  44 taaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||  ||||||||||||||||||||    
T  18693823 taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacat 18693729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
Q  32 ttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggt 131  Q
    |||||||||||||||||||||||| | || | ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||  ||||||||||||    
T  27560733 ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt 27560635  T
Q  132 cgtgaca 138  Q
    | |||||    
T  27560634 cctgaca 27560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 51534234 - 51534327
Alignment:
Q  44 taaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    |||||||||||| |||| | || |||||||||||||||||||||| ||||  ||||||||||||||||||||||  |||||||||||||||||||    
T  51534234 taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 51534327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 27733015 - 27732945
Alignment:
Q  68 tcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgacat 139  Q
    |||||||||||||||| |||| |||| ||| ||||||||||||||| ||| | |  ||||||||||||||||    
T  27733015 tcaataggcttgccgggctagaatgttttaattcgtgcgccggtcatgat-tagtgttttgggtcgtgacat 27732945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 28602721 - 28602614
Alignment:
Q  31 tttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttggg 130  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||  || |||||||||||||||||||  |||||||||||    
T  28602721 tttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtgcgccggtcacgattgtgaattttggg 28602622  T
Q  131 tcgtgaca 138  Q
    ||||||||    
T  28602621 tcgtgaca 28602614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 4706254 - 4706150
Alignment:
Q  35 aaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgt 134  Q
    |||||||||||||||||||||||| | | ||||||||  ||||||||||||||||||||  ||||| ||||||||||||||||  |||||||||||||||    
T  4706254 aaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtgcgccggtcacgattgtgaattttgggtcgt 4706155  T
Q  135 gacat 139  Q
    |||||    
T  4706154 gacat 4706150  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 15925528 - 15925635
Alignment:
Q  31 tttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttggg 130  Q
    ||||||||||||||||||||||| || ||| | | | |||||||||||| ||||||||||||   || || ||||||||||||||||||| |||||||||    
T  15925528 tttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtgcgccggtcacgatattaaattttggg 15925627  T
Q  131 tcgtgaca 138  Q
    ||||||||    
T  15925628 tcgtgaca 15925635  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 18983071 - 18983140
Alignment:
Q  68 tcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    |||||||||||||||  |||| ||||  |||||||||||||||||||||| | |  |||||||||||||||    
T  18983071 tcaataggcttgccgagctagaatgttctagttcgtgcgccggtcacgat-tagtgttttgggtcgtgaca 18983140  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 28804133 - 28804254
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    |||||||||  || ||| |||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||   |||||||||||||||||||||    
T  28804133 taagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtgcgccggtcacga 28804232  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    |||| |||||||||||||||||    
T  28804233 tattaaattttgggtcgtgaca 28804254  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 26525371 - 26525492
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    |||||| ||||||  ||||||| | || |||||||||||||||| | ||||||||||| |||| ||| |||| | ||  |||||||||||||||||||||    
T  26525371 taagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccggtcacga 26525470  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    ||||||||||| ||||||||||    
T  26525471 tattgaatttttggtcgtgaca 26525492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 36263778 - 36263729
Alignment:
Q  68 tcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    |||||||||||||||| |||  ||||  ||||||||||||||||||||||    
T  36263778 tcaataggcttgccgggctaaaatgttctagttcgtgcgccggtcacgat 36263729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 10306 - 10398
Alignment:
Q  46 aattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||    
T  10306 aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgaca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 406574 - 406455
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||| |  ||||||||||| ||  | ||| |||||||  |||||||||||||| ||||||    
T  406574 taagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtgcgccgatcacga 406475  T
Q  117 tattgaattttgggtcgtga 136  Q
    | ||||||||||||||||||    
T  406474 ttttgaattttgggtcgtga 406455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 423945 - 423827
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||| ||| ||| |||||||||||||| ||||||||||| |  ||||||||||  ||  |||||||| |||| |||||| |||| ||| |||| |    
T  423945 taagtgaaaatcaatttaaaaattgtttaaat-atagtttgtcaagtttcgtcaatagatttttcggactagaatgttttagtttgtgcaccgatcacaa 423847  T
Q  117 tattgaattttgggtcgtga 136  Q
    |  |||||||||||||||||    
T  423846 ttgtgaattttgggtcgtga 423827  T

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Target: scaffold0713 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 1289 - 1399
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    |||||| |||||| |||||||||| ||||||||||||||||||| | || |||| ||||||| ||||||||||||||  |||||||||||||||||||||    
T  1289 taagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtgcgccggtcacga 1388  T
Q  117 tattgaatttt 127  Q
    |  ||||||||    
T  1389 ttgtgaatttt 1399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 115384 - 115263
Alignment:
Q  17 taagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| | ||||||||||| |||||| || |||||| |  |||||||||||||| ||| ||    
T  115384 taagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccgatcatga 115285  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    |  |||||||||||||||||||    
T  115284 ttgtgaattttgggtcgtgaca 115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 4077 - 3958
Alignment:
Q  19 agtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgata 118  Q
    ||||||| ||| ||| |||||||||||||||||||| || || | ||||| ||||| |||||| |||||||||||  |||||||||||||| |||| ||     
T  4077 agtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtgcgccgatcactatt 3978  T
Q  119 ttgaattttgggtcgtgaca 138  Q
     |||||||||||||||||||    
T  3977 gtgaattttgggtcgtgaca 3958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 5431 - 5310
Alignment:
Q  19 agtgaaagtcagtttgaaaattgtttaaattata--gtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacga 116  Q
    ||||||| ||| ||| ||||||||||||||||||  || ||||| | ||||||||||| |||||| |||||||||||  |||||||||||||| |||| |    
T  5431 agtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcgtgcgccgatcacta 5332  T
Q  117 tattgaattttgggtcgtgaca 138  Q
    |  |||||||||||||||||||    
T  5331 ttgtgaattttgggtcgtgaca 5310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 4129 - 4227
Alignment:
Q  38 attgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgac 137  Q
    |||||||||||||||||| | || | ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||  |||| |||||||||||||    
T  4129 attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac 4226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 233174 - 233054
Alignment:
Q  18 aagtgaaagtcagtttgaaaattgtttaaattatagtttgtcatgggtcgtcaataggcttgccggactaggatgtcttagttcgtgcgccggtcacgat 117  Q
    ||||||||||||  ||| |||| || | |||| || ||||||| | || |||||||| ||||||| ||||||||||  ||||||||||||||||||||||    
T  233174 aagtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgat 233075  T
Q  118 attgaattttgggtcgtgaca 138  Q
      |||||||||||||||||||    
T  233074 tgtgaattttgggtcgtgaca 233054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 76650 - 76583
Alignment:
Q  71 ataggcttgccggactaggatgtcttagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 138  Q
    |||||||||||| |||||||||| |||||| |||||||||||| ||| | ||| |||| |||||||||    
T  76650 ataggcttgccgaactaggatgttttagtttgtgcgccggtcatgatttagaactttgagtcgtgaca 76583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 61210 - 61258
Alignment:
Q  70 aataggcttgccggactaggatgtcttagttcgtgcgccggtcacgata 118  Q
    |||||||||||||| |||| |||   |||||||||||||||||||||||    
T  61210 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgata 61258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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