View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_27 (Length: 374)
Name: NF17081_high_27
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 20401103 - 20401445
Alignment:
| Q |
14 |
tcatctctatacctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20401103 |
tcatctctatacctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtct |
20401202 |
T |
|
| Q |
114 |
caattttaaatttaccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20401203 |
caattttaaatttaccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaagtcatcatgagctagaacccattttgcagattcagc |
20401302 |
T |
|
| Q |
214 |
acactttggtttcttaacaaactcaatatctacttcgtcagttgtaaagatgacaccacgtcttactcgaatgataaatctaactggaaagcctctaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20401303 |
acactttggtttcttaacaaactcaatatctagttcgtcagttgtaaagatgacaccacgtcttactcgaatgataaacctaactggaaagcctctaaca |
20401402 |
T |
|
| Q |
314 |
acctcagaaaaatcttgtaggacagtaactggacattctgagt |
356 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20401403 |
acctcagaaaaatcttgtatgacagtaactggacattctgagt |
20401445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 20433330 - 20433672
Alignment:
| Q |
14 |
tcatctctatacctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtct |
113 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20433330 |
tcatctctatacctcccaatatcactacatgcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtct |
20433429 |
T |
|
| Q |
114 |
caattttaaatttaccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagc |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
20433430 |
caattttaaatttaccttgaaaagcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagcaagcacccatttggcagattcagc |
20433529 |
T |
|
| Q |
214 |
acactttggtttcttaacaaactcaatatctacttcgtcagttgtaaagatgacaccacgtcttactcgaatgataaatctaactggaaagcctctaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||| |
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| T |
20433530 |
acactttggtttcttaacaaactcaatatctacttcatcagttgtaaagatgacaccacgttttactattatggtaaatctaactggtaagcctctaaca |
20433629 |
T |
|
| Q |
314 |
acctcagaaaaatcttgtaggacagtaactggacattctgagt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20433630 |
acctcagaaaaatcttgtaggacagtaactggacattctgagt |
20433672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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