View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_30 (Length: 338)
Name: NF17081_high_30
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 13870200 - 13870501
Alignment:
| Q |
20 |
gaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcctaattacctccaaaagactattgc |
119 |
Q |
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| T |
13870200 |
gaactcaccataaaactacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcccaattacctccaaaagactattgc |
13870299 |
T |
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| Q |
120 |
acaaaatggtttcccacacaaagagttttcttcgtcaaaccaaagaccaatagcctacttcccagttaagttaattgttgcattgaactgattccggcca |
219 |
Q |
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| T |
13870300 |
acaaaatggtttcccacaca--gagttttcttcgtcaaaccaaagacaaatagcctacttcccagttaagttgattgttccattgaactgattccggcca |
13870397 |
T |
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| Q |
220 |
ggaagagcatccttaacggcgagagtgttgtcatccacggtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaacagag |
319 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13870398 |
ggaagagcatccttaacggtgagagtgttgtcatccacagtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaacagag |
13870497 |
T |
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| Q |
320 |
tcct |
323 |
Q |
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|||| |
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| T |
13870498 |
tcct |
13870501 |
T |
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