View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_36 (Length: 309)
Name: NF17081_high_36
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 36754266 - 36754314
Alignment:
| Q |
18 |
caaataaggatctcatgtatgtacaattacgaagactataatatctcaa |
66 |
Q |
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| T |
36754266 |
caaataaggatctgatgtatgtacaattacgaagactataatatctcaa |
36754314 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 12434203 - 12434240
Alignment:
| Q |
198 |
gttgaataaagttgaatgtataacttttaagacaatta |
235 |
Q |
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| T |
12434203 |
gttgaataaagttgaatgcacaacttttaagacaatta |
12434240 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 44498338 - 44498301
Alignment:
| Q |
198 |
gttgaataaagttgaatgtataacttttaagacaatta |
235 |
Q |
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| T |
44498338 |
gttgaataaagttgaatgcacaacttttaagacaatta |
44498301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 25059258 - 25059222
Alignment:
| Q |
198 |
gttgaataaagttgaatgtataacttttaagacaatt |
234 |
Q |
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| T |
25059258 |
gttgaataaagttgaatgtacaacttttgagacaatt |
25059222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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