View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_high_37 (Length: 307)

Name: NF17081_high_37
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_high_37
NF17081_high_37
[»] chr5 (1 HSPs)
chr5 (1-296)||(43224849-43225133)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 43225133 - 43224849
Alignment:
Q  1 tttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaactcatgtggtaactcatcttccttacattagtatcttaataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||| |||| |||||||    
T  43225133 tttaccttttctcttaattaaaagctgcatattcattcttatatttatttaa----ctcatgtcgtaactcatcttccttacattagcatctgaataaat 43225038  T
Q  101 aaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtattaggcttgttcaaggtatgtatgtttggattttcatggccttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43225037 aaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtattaggcttgttcaaggtatgtatgtttggattttcatggccttt 43224938  T
Q  201 ggaattgttccatgctatagtgcagattttttctctcatactgtgctctcnnnnnnnnnncttctcgctctttatcctattatacaactctttctt 296  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||            ||||||||||||||||| |||||||||||||||||    
T  43224937 ggaattgttccatgc--tagtgcagattttttctctcttactgtgctct-----tttttttttctcgctctttatcctgttatacaactctttctt 43224849  T

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