View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_38 (Length: 300)
Name: NF17081_high_38
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 23940959 - 23940690
Alignment:
| Q |
18 |
acttagtctcttttaaggtgcttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacat |
117 |
Q |
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| T |
23940959 |
acttagtctcttttaaggtgtttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacat |
23940860 |
T |
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| Q |
118 |
tccttgtactttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaac |
217 |
Q |
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| T |
23940859 |
tccttgtactttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaac |
23940760 |
T |
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| Q |
218 |
ttttggcagcaaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttct |
287 |
Q |
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| T |
23940759 |
ttttggcggcaaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttct |
23940690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 23938542 - 23938488
Alignment:
| Q |
26 |
tcttttaaggtgcttagagtttattgcattgctttagttagttttagactttgtt |
80 |
Q |
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| T |
23938542 |
tctttcaaggtgtttagagttgattgcattgttttagttagttttagactctgtt |
23938488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 23938454 - 23938371
Alignment:
| Q |
79 |
ttttacattccttgttgatgctttactataaataaacattccttgtactttgattatttgaatgaaaccaatatttcaccttaca |
163 |
Q |
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| T |
23938454 |
ttttacactctttgttgatggtttac-atagataaacttctcttgtactttgattagataaatgaaaccaatatttacccttaca |
23938371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 44470506 - 44470566
Alignment:
| Q |
105 |
tataaataaacattccttgtactttgattatttgaatgaaaccaata-tttcaccttacaa |
164 |
Q |
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| T |
44470506 |
tatatataagcatcccttgtactttgtttaattgaatgaaaccaatattttcaccttacaa |
44470566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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