View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_45 (Length: 278)
Name: NF17081_high_45
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 31373670 - 31373889
Alignment:
| Q |
43 |
ctaattaaacgcactgtcataatgagaaaatgaaaacaatctagatttctatttctttcttgtttcaaccaaaactatcaagcaacttaaactcctattt |
142 |
Q |
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| T |
31373670 |
ctaattaaacgcactgtcataatgagaaaatgaaaacaatctagatttctatttctttcttgtttcaaccaaaactatcaagcaacttaaactcctattt |
31373769 |
T |
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| Q |
143 |
atagcttttaccatcaagatgccatgcccttgcaatgtaaatcgacattataaattatgaagttatgaaagaaaatataaaaagaaagaagtaggtgtaa |
242 |
Q |
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| T |
31373770 |
atagcttttaccatcaagatgccatgcccttgcaatgtaaatcgacattataaattatgaagttatgaaagaaaatataaaaagaaagaagtaggtgtaa |
31373869 |
T |
|
| Q |
243 |
atttctcacagatattttac |
262 |
Q |
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|||||||||||||||||||| |
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| T |
31373870 |
atttctcacagatattttac |
31373889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 31326177 - 31326440
Alignment:
| Q |
1 |
aacattaaattaaatatttaataaaccaaatgnnnnnnnnnnctaattaaacgcactgtcataatgagaaaatgaaaacaatctagatttctatttcttt |
100 |
Q |
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| T |
31326177 |
aacattaaattaaataattaataaaccaaatgaaaaaaaa--ctaattaaacgcactgtcataatgagaaaatgaaaacaatctagatttctatttcttt |
31326274 |
T |
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| Q |
101 |
cttgtttcaaccaaaactat----caagcaacttaaactcctatttatagcttttaccatcaagatgccatgcccttgcaatgtaaatcgacattataaa |
196 |
Q |
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| T |
31326275 |
cttgtttcaaccaaaactatatatcaagcaacttaaactcctatttatagcttttaccatcaagatgccatgcccttgcaatgtaaatcgacattataaa |
31326374 |
T |
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| Q |
197 |
ttatgaagttatgaaagaaaatataaaaagaaagaagtaggtgtaaatttctcacagatattttac |
262 |
Q |
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| T |
31326375 |
ttatgaagttatgaaagaaaatataaaaagaaagaagtaggtgtaaatttctcacagatattttac |
31326440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 5477900 - 5477855
Alignment:
| Q |
104 |
gtttcaaccaaaactatcaagcaacttaaactcctatttatagctt |
149 |
Q |
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| T |
5477900 |
gtttcaaccaaaattatcaagcaatataaattcctatttatagctt |
5477855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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