View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_high_6 (Length: 540)
Name: NF17081_high_6
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 29055261 - 29055439
Alignment:
| Q |
18 |
gttccctactcattgagttaaatatctggactccttcctctacttgccttgaatggctacaggcagatagaacacaagtaaaagtaacaaaatcaggttt |
117 |
Q |
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| T |
29055261 |
gttccctactcattgagttaaatatctggactccttcctctacttgccttgaatggctacaggcagatagaacacaagtaaaagtaacaaaatcaggctt |
29055360 |
T |
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| Q |
118 |
gccccttgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagatcatt |
196 |
Q |
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| T |
29055361 |
gccccttgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagaccatt |
29055439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 374 - 533
Target Start/End: Original strand, 29055505 - 29055664
Alignment:
| Q |
374 |
actgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatccatca |
473 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29055505 |
actgctaattgttatttcatcaggtttaaatcccattgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatccatca |
29055604 |
T |
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| Q |
474 |
gtgacaactgacaacattccatgtaatttcatctgttgagttgtgactccacctttgcta |
533 |
Q |
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| T |
29055605 |
gtgacaactgacaacattccatgtaatttcatctgttgagttgtgactccatctttgcta |
29055664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 24 - 328
Target Start/End: Original strand, 34636413 - 34636710
Alignment:
| Q |
24 |
tactcattgagttaaatatctggactccttcctctacttgccttgaatggctacaggcagatagaacacaagtaaaagtaacaaaatcaggtttgcccct |
123 |
Q |
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| T |
34636413 |
tactcattgaattgaatatctggactccttcctctaccagccttgaatggctacagctagatagaacacaaataaaagtaacagaatcgggcttgaccat |
34636512 |
T |
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| Q |
124 |
tgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagatcattgtgttccatnnnnnnnnncatctttta |
223 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
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| T |
34636513 |
tgatagtagcatcttctcaaagagaaagagtgcttcttttccattcccgtgcatcgcatttgcattgatcattgtggtcca--agcaacaacatctttta |
34636610 |
T |
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| Q |
224 |
taggcatcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttccg |
323 |
Q |
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||| |||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| |
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| T |
34636611 |
tagcaatcatatcgaagacattccttgaaaaactcaaatcaccgcatttggcatacat-----atagagtgtttgtgcatgtcaagtaccaaactttcca |
34636705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 321
Target Start/End: Complemental strand, 33900283 - 33900087
Alignment:
| Q |
123 |
ttgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagatcattgtgttccatnnnnnnnnncatctttt |
222 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||| ||||| ||| |||| ||||||| |
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| T |
33900283 |
ttgatagtagcatcttctcgaagagaaaaagtgcttcttttccattcccatgcatcccatttgcaaatatcatcgtgctcca--agcaacaacatctttc |
33900186 |
T |
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| Q |
223 |
ataggcatcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactttc |
321 |
Q |
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|| ||| |||| || | ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
33900185 |
gcagacattatattgaagaaattccttgaaagactcaaatcaccgcatttggcatacatgtatactagagctactgttcttgtcaagtcccaaactttc |
33900087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 34636777 - 34636854
Alignment:
| Q |
373 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattc |
450 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
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| T |
34636777 |
tactactaattgttatttcattgggtttaaatcccatattttgcatcttcctaagcatctccattgcctcttctattc |
34636854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 33900009 - 33899913
Alignment:
| Q |
373 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatcc |
469 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| |||| ||||| |||| |||||||| ||||| | |||||| || |||||||| ||||| |
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| T |
33900009 |
tactactaattgttatttcattgggtttaaatcccatattttggatctttctaagcatctccaatgcctcatttattcgcccgttctccacacatcc |
33899913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 13792998 - 13793304
Alignment:
| Q |
20 |
tccctactcattgagttaaatatctggactccttcctctacttgccttgaatggctacaggcagatagaacacaagtaaaagtaacaaaatcaggtttgc |
119 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||| || |||| |||||| |
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| T |
13792998 |
tccctactcattgaattgaatatctggactccttcttctactagcattgaatggctacaagcagatagaacacaagtaaaagtagcagaatcgggtttga |
13793097 |
T |
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| Q |
120 |
cccttgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagatcattgtgttccatnnnnnnnnncatct |
219 |
Q |
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|| ||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| |
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| T |
13793098 |
ccattgatagtagcatcttctcgaagagtgaaagtgcttcttttccattcccatgcatcccatttgcaaagatcattgtgttccat--gaaaaaacatcc |
13793195 |
T |
|
| Q |
220 |
tttataggcatcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactt |
319 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||| ||| |||||||||| ||| |
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| T |
13793196 |
tttataggcatcatatcgaagacattccttgaaagactcaaaccaccgcatttggcatacatatctactagagcgtttgtccttgccaagtcccaatctt |
13793295 |
T |
|
| Q |
320 |
tccgatgcc |
328 |
Q |
| |
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||| ||||| |
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| T |
13793296 |
tccaatgcc |
13793304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 28743244 - 28742938
Alignment:
| Q |
20 |
tccctactcattgagttaaatatctggactccttcctctacttgccttgaatggctacaggcagatagaacacaagtaaaagtaacaaaatcaggtttgc |
119 |
Q |
| |
|
||||||| |||||| || |||||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||| || | | |
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| T |
28743244 |
tccctacccattgaattgaatatctgaactccttcctctactagccttgaatggctacaaccagatagaacaccagtaaaagtaacagaattgggctgga |
28743145 |
T |
|
| Q |
120 |
cccttgatagtagcatcttctcgaagagaaaaaatgcttattttccattcccgtgcatcgcatttgcaaagatcattgtgttccatnnnnnnnnncatct |
219 |
Q |
| |
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| | ||||||||||||||| || |||||||||| |||| |||||||||||| ||||| ||||| |||| ||||||||||||||| ||||| |
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| T |
28743144 |
cacgtgatagtagcatcttatcaaagagaaaaagcgcttcttttccattcccatgcattgcattcgcaatgatcattgtgttcca--ggcaacaacatct |
28743047 |
T |
|
| Q |
220 |
tttataggcatcatatcgagaacattccttgaaagactcaaatcaccgcatttggcgtacatgtctactagagagtttgtgtttgtcaagtcccaaactt |
319 |
Q |
| |
|
||| || |||||||||| | ||||||||||||||| |||| || |||||||| || ||||||| || ||||| ||||| ||||||| |||| ||||| |
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| T |
28743046 |
tttctacgcatcatatcaaagacattccttgaaagattcaagtcgccgcatttagcatacatgtataatagagccgttgtgcttgtcaaatccccaactt |
28742947 |
T |
|
| Q |
320 |
tccgatgcc |
328 |
Q |
| |
|
||| ||||| |
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| T |
28742946 |
tccaatgcc |
28742938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 13793378 - 13793449
Alignment:
| Q |
380 |
aattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcg |
451 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13793378 |
aattgttgtttcatcaggtttaaatcccatcgtttgcatcttcctaaatatctccatcgcctcttctattcg |
13793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 470
Target Start/End: Complemental strand, 28742871 - 28742774
Alignment:
| Q |
373 |
tactgctaattgttatttcatcaggtttaaatcccatcgtttgcatcttcctaaacatctccatcgcctcttctattcgtccattctccacgcatcca |
470 |
Q |
| |
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|||| |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||| ||||||| ||||||| |
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| T |
28742871 |
tactactaattgttatttcgttaggtttaaatcccattttttgcatcttcctaaacatctccactgcctcctctgatcgtccgttctccatgcatcca |
28742774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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