View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_high_9 (Length: 496)

Name: NF17081_high_9
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_high_9
NF17081_high_9
[»] chr8 (4 HSPs)
chr8 (141-274)||(37193273-37193406)
chr8 (141-274)||(37182143-37182274)
chr8 (55-87)||(3193523-3193555)
chr8 (147-223)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (141-275)||(21105366-21105500)
chr3 (141-207)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (143-270)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (143-270)||(10233990-10234117)
chr6 (200-268)||(4619835-4619903)
[»] chr7 (2 HSPs)
chr7 (415-476)||(25605781-25605842)
chr7 (415-476)||(25625422-25625483)
[»] chr5 (1 HSPs)
chr5 (415-476)||(20436001-20436062)
[»] chr4 (1 HSPs)
chr4 (415-476)||(5332143-5332204)
[»] chr2 (1 HSPs)
chr2 (53-87)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (200-268)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  141 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 240  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  241 tcaccatggttttgtgagtttccaaacacaggct 274  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  141 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 240  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  241 tcaccatggttttgtgagtttccaaacacaggct 274  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 3193555 - 3193523
Alignment:
Q  55 ttaaataatttagagcaactagtttaatctatt 87  Q
    |||||||| ||||||||||||||||||||||||    
T  3193555 ttaaataaattagagcaactagtttaatctatt 3193523  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  147 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 223  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  141 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 240  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  241 tcaccatggttttgtgagtttccaaacacaggcta 275  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  141 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 207  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  143 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 242  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  243 accatggttttgtgagtttccaaacaca 270  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  143 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 242  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  243 accatggttttgtgagtttccaaacaca 270  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q  200 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 268  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  4619903 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 4619835  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 25605781 - 25605842
Alignment:
Q  415 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 476  Q
    |||||| ||| |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25605781 ttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25605842  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 25625422 - 25625483
Alignment:
Q  415 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 476  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25625422 ttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25625483  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 20436001 - 20436062
Alignment:
Q  415 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 476  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  20436001 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 20436062  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 5332143 - 5332204
Alignment:
Q  415 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 476  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  5332143 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 5332204  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  53 aattaaataatttagagcaactagtttaatctatt 87  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 969 - 1037
Alignment:
Q  200 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 268  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  969 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 1037  T

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