View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17081_low_12 (Length: 480)
Name: NF17081_low_12
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_12 |
 | |
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| [»] scaffold0024 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 19887625 - 19887170
Alignment:
| Q |
7 |
agcagcacagacatggcatgatatgtgattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
106 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19887625 |
agcaccacaaacatggcatgatatgtcattattatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
19887526 |
T |
|
| Q |
107 |
tctcttattattcctctggttttattatatgaatcaggaacatttaataaaggcataacttctttcaacaactctaacagagaagtaaaggatgcattgc |
206 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19887525 |
tctcttatcattcctctagttttattatatgaatcaggaacatttaataaaggcatagcttctttcaacaactctaacagagaagtaaaggatgcattgc |
19887426 |
T |
|
| Q |
207 |
tccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
19887425 |
tccaaccatgaagacacttcaacaagtacagacgaatagtgaaagataatgtagagaaatttttgcattctgggtacaactcttggcttgcttcttcaat |
19887326 |
T |
|
| Q |
307 |
cagattataaaattttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctgtcattcaatagttcatcaatg |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
19887325 |
cagattataaaactttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctatcattcaataattcatcaatg |
19887226 |
T |
|
| Q |
407 |
ttatctagttcatcctcttcagaatctgtatcaccatcaatatccatgggacttaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19887225 |
ttatctagttcatcctcttcagaatctgtatcaccatcaatatccatgggacttaa |
19887170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 32809130 - 32809585
Alignment:
| Q |
7 |
agcagcacagacatggcatgatatgtgattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
106 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32809130 |
agcaccacaaacatggcatgatatgtcattattatgatctttccaatatagcatacaatcattaggacatgcgtcaatcttactataatcaagtcccaaa |
32809229 |
T |
|
| Q |
107 |
tctcttattattcctctggttttattatatgaatcaggaacatttaataaaggcataacttctttcaacaactctaacagagaagtaaaggatgcattgc |
206 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32809230 |
tctcttatcattcctctagttttattatatgaatcaggaacatttaataaaggcatagcttctttcaacaactctaacagagaagtaaaggatgcattgc |
32809329 |
T |
|
| Q |
207 |
tccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32809330 |
tccaaccatgaagacacttcaacaagtacagacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaat |
32809429 |
T |
|
| Q |
307 |
cagattataaaattttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctgtcattcaatagttcatcaatg |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32809430 |
cagattataaaactttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctgtcattcaatagttcatcaatg |
32809529 |
T |
|
| Q |
407 |
ttatctagttcatcctcttcagaatctgtatcaccatcaatatccatgggacttaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
32809530 |
ttatctagttcatcctcttcagaatctgtatcaccatctatatccatgggatttaa |
32809585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 24240981 - 24240526
Alignment:
| Q |
7 |
agcagcacagacatggcatgatatgtgattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
106 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24240981 |
agcaccacaaacatggcatgatatgtcattattatgatctttctaatatagcatacagtcattaggacatgcgtcaatcttattataatcaagtctcaaa |
24240882 |
T |
|
| Q |
107 |
tctcttattattcctctggttttattatatgaatcaggaacatttaataaaggcataacttctttcaacaactctaacagagaagtaaaggatgcattgc |
206 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24240881 |
tctcttatcattcctctagttttattatatgaatcaggaacatttaataaaggcatagcttctttcaacaactctaatagagaagtaaaggatgcattgc |
24240782 |
T |
|
| Q |
207 |
tccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaat |
306 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24240781 |
tccaaccatgaagacagtttaacaagtacagacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggctcgcttcttcaat |
24240682 |
T |
|
| Q |
307 |
cagattataaaattttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctgtcattcaatagttcatcaatg |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24240681 |
cagattataaaactttttagcatcatcactaagaccattgttaactccacactcctcttgtatcacatctctaaatctgtcattcaatagttcatcaatg |
24240582 |
T |
|
| Q |
407 |
ttatctagttcatcctcttcagaatctgtatcaccatcaatatccatgggacttaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24240581 |
ttatctagttcatcctcttcagaatctgtatcaccatcgatatccatgggatttaa |
24240526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 21228176 - 21228079
Alignment:
| Q |
158 |
ggcataacttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataa |
255 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||| || |||||||||||||| ||||| || || ||||||||||| | ||||||||||| ||||| |
|
|
| T |
21228176 |
ggcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaacaagtatattcgaatagtgaatgataa |
21228079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 542997 - 543157
Alignment:
| Q |
7 |
agcagcacagacatggcatgatatgtgattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
106 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
542997 |
agcaccacaaacatggcatgatatgtcattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtcccaaa |
543096 |
T |
|
| Q |
107 |
tctcttattattcctctggttttattatatgaatcaggaacatttaataaaggcataactt |
167 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
543097 |
tctcttatcattcatctagttttattatatgaatcaggaacttttaataaatgcataactt |
543157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 16734059 - 16734178
Alignment:
| Q |
165 |
cttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatgtagagaa |
264 |
Q |
| |
|
|||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| |||||||| |
|
|
| T |
16734059 |
cttctttcaataactctaagagagaagtgaacgatgcattgctccacccatgaagacacttcaataagtacattcgaataatgaaggataaggtagagaa |
16734158 |
T |
|
| Q |
265 |
atttttgcatcctgggtaca |
284 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
16734159 |
attttcgcatcctgtgtaca |
16734178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 19307900 - 19307575
Alignment:
| Q |
5 |
ggagcagcacagacatggcatgatatgtgattcttatgatctttccaatatagcatacagtcattaggacatgcgtcaatcttactataatcaagtccca |
104 |
Q |
| |
|
|||||| |||| |||||||| || | | ||||| ||||||||||||||| | ||| || |||||||| || || |||||||| ||||||| | |||| |
|
|
| T |
19307900 |
ggagcaccacaaacatggcaagaagtatcattctcatgatctttccaatagatcatgcaatcattagggcaagcatcaatctttttataatccatcccca |
19307801 |
T |
|
| Q |
105 |
aatctcttattattcctctggttttattatatgaatcaggaacatttaataaaggcataacttctttcaacaactctaacagagaagtaaaggatgcatt |
204 |
Q |
| |
|
| || |||| || | | | |||||||| | | |||||| | || || ||||||||| ||||| ||||||||||||| || | | | || |||| ||| |
|
|
| T |
19307800 |
agtcctttatcatgcttttagttttattgaacgtatcagggatgttcaaaaaaggcatagcttctctcaacaactctaagagtgcattgaatgatgtatt |
19307701 |
T |
|
| Q |
205 |
gctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatgtagagaaatttttgcatcctgggtacaactcttggcttgcttcttca |
304 |
Q |
| |
|
||||||||||| ||||||||| || || || | ||||| |||| || ||| ||||||| ||||||| || || ||||||||||| | |||||| |
|
|
| T |
19307700 |
gctccaaccataaagacacttaaataaatatagccgaatgatgaacgacaatttagagaatgttttgcaacccggatacaactcttgttgggattcttcg |
19307601 |
T |
|
| Q |
305 |
atcagattataaaattttttagcatc |
330 |
Q |
| |
|
|| ||||||||||| ||||| ||||| |
|
|
| T |
19307600 |
attagattataaaacttttttgcatc |
19307575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 19489484 - 19489581
Alignment:
| Q |
158 |
ggcataacttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataa |
255 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||| || |||||||||||||| ||||| || || ||||||||||| | ||||||||||| ||||| |
|
|
| T |
19489484 |
ggcatagcctctttcaacaattctaagagagcagtgaacgatgcattgctccatccatggaggcatttcaacaagtagattcgaatagtgaatgataa |
19489581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 9824451 - 9824623
Alignment:
| Q |
158 |
ggcataacttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatg |
257 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||| || |||||||||||||| ||||| || || ||||||||||| | ||||||||||| ||||| | |
|
|
| T |
9824451 |
ggcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaacaagtagattcgaatagtgaatgataacg |
9824550 |
T |
|
| Q |
258 |
tagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaatcagattataaaattttttagcatc |
330 |
Q |
| |
|
|| ||| ||| ||||| || ||||||||||| |||| || |||| || ||||||||||| || ||||| |
|
|
| T |
9824551 |
aggaaaaactttcacatccaggatacaactcttgatttgcatcatcaactagtttataaaatttctttgcatc |
9824623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 18447869 - 18447697
Alignment:
| Q |
158 |
ggcataacttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataatg |
257 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||| || |||||||||||||| ||||| || || ||||||||||| | ||||||||||| ||||| | |
|
|
| T |
18447869 |
ggcatagcctctttcaacaattctaagagagcagtgaatgatgcattgctccatccatggaggcatttcaacaagtagattcgaatagtgaatgataacg |
18447770 |
T |
|
| Q |
258 |
tagagaaatttttgcatcctgggtacaactcttggcttgcttcttcaatcagattataaaattttttagcatc |
330 |
Q |
| |
|
|| ||| ||| ||||| || ||||||||||| |||| || |||| || ||||||||||| || ||||| |
|
|
| T |
18447769 |
aggaaaaactttcacatccaggatacaactcttgatttgcatcatcaactagtttataaaatttctttgcatc |
18447697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 125625 - 125722
Alignment:
| Q |
158 |
ggcataacttctttcaacaactctaacagagaagtaaaggatgcattgctccaaccatgaagacacttcaacaagtacacacgaatagtgaaagataa |
255 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||| || |||||||||||||| ||||| || || ||||||||||| | ||||||||||| ||||| |
|
|
| T |
125625 |
ggcatagcctctttcaacaattctaagagagcagtgaaagatgcattgctccatccatggaggcatttcaacaagtagattcgaatagtgaatgataa |
125722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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