View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_low_13 (Length: 479)

Name: NF17081_low_13
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_low_13
NF17081_low_13
[»] scaffold0140 (2 HSPs)
scaffold0140 (75-301)||(35482-35711)
scaffold0140 (382-465)||(35793-35877)
[»] chr1 (12 HSPs)
chr1 (74-293)||(52947346-52947565)
chr1 (70-239)||(46652676-46652845)
chr1 (72-242)||(46651358-46651528)
chr1 (75-132)||(28251931-28251988)
chr1 (75-134)||(16673256-16673315)
chr1 (72-134)||(7653683-7653745)
chr1 (71-105)||(10771694-10771728)
chr1 (69-134)||(36145338-36145403)
chr1 (72-105)||(44870229-44870262)
chr1 (64-105)||(45915496-45915537)
chr1 (77-105)||(10771355-10771383)
chr1 (73-105)||(23351668-23351700)
[»] chr2 (11 HSPs)
chr2 (67-239)||(20587031-20587203)
chr2 (74-242)||(20588351-20588519)
chr2 (71-105)||(24559581-24559615)
chr2 (65-105)||(2237972-2238012)
chr2 (41-73)||(6394097-6394129)
chr2 (73-105)||(28916283-28916315)
chr2 (75-105)||(2238851-2238881)
chr2 (75-105)||(21716440-21716470)
chr2 (75-105)||(21720227-21720257)
chr2 (75-105)||(28917134-28917164)
chr2 (63-105)||(29090878-29090920)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-239)||(193587-193755)
[»] chr4 (8 HSPs)
chr4 (75-239)||(39929249-39929413)
chr4 (75-242)||(39927933-39928100)
chr4 (60-105)||(47864474-47864519)
chr4 (405-472)||(13508123-13508190)
chr4 (66-105)||(52477636-52477675)
chr4 (75-105)||(15807656-15807686)
chr4 (73-105)||(35022481-35022513)
chr4 (77-105)||(52502407-52502435)
[»] chr5 (5 HSPs)
chr5 (72-239)||(42775417-42775584)
chr5 (75-134)||(42776818-42776877)
chr5 (75-105)||(30381603-30381633)
chr5 (75-105)||(35988855-35988885)
chr5 (74-134)||(30332282-30332342)
[»] scaffold0524 (2 HSPs)
scaffold0524 (75-300)||(8903-9128)
scaffold0524 (68-214)||(7691-7837)
[»] chr3 (12 HSPs)
chr3 (81-242)||(8392695-8392856)
chr3 (75-239)||(45981407-45981571)
chr3 (72-105)||(20289619-20289652)
chr3 (62-134)||(45982799-45982871)
chr3 (75-134)||(8391401-8391460)
chr3 (70-105)||(26052205-26052240)
chr3 (75-105)||(25165899-25165929)
chr3 (75-105)||(25166775-25166805)
chr3 (71-105)||(54600129-54600163)
chr3 (72-105)||(35325794-35325827)
chr3 (70-102)||(20288886-20288918)
chr3 (73-105)||(35324994-35325026)
[»] scaffold0472 (2 HSPs)
scaffold0472 (70-243)||(10337-10510)
scaffold0472 (174-242)||(9119-9187)
[»] chr7 (14 HSPs)
chr7 (75-239)||(43546625-43546789)
chr7 (65-134)||(28848548-28848617)
chr7 (75-134)||(25008092-25008151)
chr7 (75-242)||(43545342-43545509)
chr7 (174-239)||(28848653-28848718)
chr7 (65-105)||(3843259-3843299)
chr7 (73-105)||(4706632-4706664)
chr7 (74-105)||(4707497-4707528)
chr7 (75-134)||(25009485-25009544)
chr7 (75-134)||(28849968-28850027)
chr7 (75-105)||(23966315-23966345)
chr7 (75-105)||(26776310-26776340)
chr7 (198-243)||(25008205-25008250)
chr7 (74-134)||(45277967-45278027)
[»] chr8 (9 HSPs)
chr8 (75-238)||(35506824-35506987)
chr8 (72-105)||(11761035-11761068)
chr8 (73-105)||(26635508-26635540)
chr8 (74-105)||(23153547-23153578)
chr8 (71-105)||(9899682-9899716)
chr8 (75-105)||(23154338-23154368)
chr8 (72-105)||(26636288-26636321)
chr8 (67-103)||(3809655-3809691)
chr8 (77-105)||(37586724-37586752)
[»] chr6 (8 HSPs)
chr6 (65-105)||(9699185-9699225)
chr6 (75-105)||(6159754-6159784)
chr6 (75-105)||(24051255-24051285)
chr6 (75-105)||(28302193-28302223)
chr6 (75-105)||(28509850-28509880)
chr6 (75-105)||(29979254-29979284)
chr6 (72-105)||(22353298-22353331)
chr6 (76-105)||(24052024-24052053)
[»] scaffold0765 (1 HSPs)
scaffold0765 (74-105)||(386-417)
[»] scaffold0369 (1 HSPs)
scaffold0369 (75-134)||(8270-8329)
[»] scaffold0141 (1 HSPs)
scaffold0141 (75-105)||(10306-10336)


Alignment Details
Target: scaffold0140 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 75 - 301
Target Start/End: Original strand, 35482 - 35711
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnn--gtttcaaaattctccttgtaag-cttttttc 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          ||||||||| |||||||||||| ||||||||    
T  35482 ggcttaaatatgcaaaccgtccctgtaatttcgcgcatttttgcaattcgtccctgtattcttttttttgtttcaaaactctccttgtaagtcttttttc 35581  T
Q  172 gttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtggcttactgtgacctggcaaaaggagtgtta 271  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||    
T  35582 gttttgcaaatggtcattcccgttaactcccgttacaaaaacggcgaggtggcagacggagacacacgtggcttacggtgacttggcaaaaggagggtta 35681  T
Q  272 cgtgtcaaaagagttggggagtggctagat 301  Q
    ||||||||||||| |||| |||||||||||    
T  35682 cgtgtcaaaagagctgggtagtggctagat 35711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 382 - 465
Target Start/End: Original strand, 35793 - 35877
Alignment:
Q  382 ctgtagttttcatcttcttcttccctctgtttatttgttctgcatctctcacctactaccttcttcatctttc-tgccaaatttt 465  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  35793 ctgtagttttcatcttcttcatccttctgtttatttgttcagcatctctcacccactaccttcttcatctttcttgccaaatttt 35877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 74 - 293
Target Start/End: Original strand, 52947346 - 52947565
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttcgt 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||       ||||||||| ||||||||||||||||||||||    
T  52947346 tggcttaaatatgcaaaccgtctctgtaattttgcgcatttttgcaattcgtccatgtatctttttttgtttcaaaactctccttgtaagcttttttcgt 52947445  T
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtggcttactgtgacctggcaaaaggagtgttacg 273  Q
    |||||||||| | |||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||| || ||||||||| ||||||    
T  52947446 tttgcaaatgattcttcccgttaactcccgttacaaaaacggcgaggtggcaggcggagacatacgtggcttagtgtgacttgacaaaaggagggttacg 52947545  T
Q  274 tgtcaaaagagttggggagt 293  Q
    ||||||||||||||| ||||    
T  52947546 tgtcaaaagagttggtgagt 52947565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 46652845 - 46652676
Alignment:
Q  70 attttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttt 169  Q
    |||| |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |  |     
T  46652845 atttaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttacta 46652746  T
Q  170 tcgttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
     |  ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||    
T  46652745 gccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacg 46652676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 46651358 - 46651528
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagct-ttttt 170  Q
    |||||||  |||||||||| |||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |     |    
T  46651358 tttggctctaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttgccaat 46651457  T
Q  171 cgttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    || ||||||| |  ||| ||||||||||||||||||||||||||    ||||||||||| ||||||||||||    
T  46651458 cg-tttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtgg 46651528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 28251931 - 28251988
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgta 132  Q
    ||||||||||||||||  ||||||||||||| |||||||||||   ||||||||||||    
T  28251931 ggcttaaatatgcaaaaggtccctgtaatttagcgcatttttggttttcgtccctgta 28251988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 16673315 - 16673256
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    |||||||||||| ||| ||||||||||||||||||  ||||||   ||||||||||||||    
T  16673315 ggcttaaatatgtaaatcgtccctgtaattttgcgtgtttttggttttcgtccctgtatc 16673256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 7653683 - 7653745
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||||||||||||| ||| |||||||||||||| ||| ||||||    ||||||||||||||    
T  7653683 tttggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatc 7653745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 10771728 - 10771694
Alignment:
Q  71 ttttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||| ||||||||||||||||||||||||||||    
T  10771728 ttttggtttaaatatgcaaaccgtccctgtaattt 10771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 36145338 - 36145403
Alignment:
Q  69 aattttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| |||||||||||| ||| |||||||||||||| ||| ||||||    ||||||||||||||    
T  36145338 aatttaggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatc 36145403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 44870229 - 44870262
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||| ||||||||||||    
T  44870229 tttggcttaaatatgcaaaccatccctgtaattt 44870262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 45915496 - 45915537
Alignment:
Q  64 tatttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||| ||| ||||||||||||||| |||||||||||||||    
T  45915496 tatttattttaggcttaaatatgcaatccgtccctgtaattt 45915537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 10771355 - 10771383
Alignment:
Q  77 cttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||    
T  10771355 cttaaatatgcaaaccgtccctgtaattt 10771383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 23351700 - 23351668
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||| |||||||||||||||    
T  23351700 ttggcttaaatatgcaatccgtccctgtaattt 23351668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 20587031 - 20587203
Alignment:
Q  67 ttaattttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagctt 166  Q
    |||||||||||||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |     
T  20587031 ttaattttggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagtta 20587130  T
Q  167 ttttcgttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
     |  |  ||||||| | |||| ||| ||||||||||||||||||||||    ||||||||||| |||||||||    
T  20587131 ctagccgtttgcaattcgtccctcctgttaactcccgttacaaaaacgttgtggtggcagacggagacacacg 20587203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 242
Target Start/End: Complemental strand, 20588519 - 20588351
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttt-tcg 172  Q
    ||||||||||||| ||| |||||||||||||| |||  ||||||||| ||||| |||||||       ||||||||||  |||||||||| |     |||    
T  20588519 tggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtctctgtatctttttttgtttcaaaatcatccttgtaagttgccaatcg 20588420  T
Q  173 ttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    ||| |||| | |||| ||||||||||||||||||||||||||    ||||||||||| ||||||||||||    
T  20588419 ttt-gcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacgtagacacacgtgg 20588351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 24559615 - 24559581
Alignment:
Q  71 ttttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||||||    
T  24559615 ttttggcttaaatatgcaaaccgtccctgtaattt 24559581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 2237972 - 2238012
Alignment:
Q  65 atttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  2237972 atttatttatggcttaaatatgcaaaccgtccctgtaattt 2238012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 6394097 - 6394129
Alignment:
Q  41 gttccaatgcacccttgtccacttatttaattt 73  Q
    |||||||||||||||||||||||||||||||||    
T  6394097 gttccaatgcacccttgtccacttatttaattt 6394129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 28916283 - 28916315
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||||    
T  28916283 ttggcttaaatatgcaaaccgtccctgtaattt 28916315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 2238881 - 2238851
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  2238881 ggcttaaatatgcaaaccgtccctgtaattt 2238851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 21716440 - 21716470
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  21716440 ggcttaaatatgcaaaccgtccctgtaattt 21716470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 21720257 - 21720227
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  21720257 ggcttaaatatgcaaaccgtccctgtaattt 21720227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 28917164 - 28917134
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  28917164 ggcttaaatatgcaaaccgtccctgtaattt 28917134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 29090878 - 29090920
Alignment:
Q  63 ttatttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||| |||  ||||||||||||||||||||||||||||||    
T  29090878 ttatttattttacgcttaaatatgcaaaccgtccctgtaattt 29090920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 193587 - 193755
Alignment:
Q  71 ttttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagctttttt 170  Q
    |||||||||||||||| ||| |||| ||||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |  |      
T  193587 ttttggcttaaatatgtaaaacgtctctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttaatag 193686  T
Q  171 cgttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
    |  ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||    
T  193687 ccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacg 193755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 39929413 - 39929249
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttcgtt 174  Q
    |||||||||||| ||| ||||| |||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |  |  |  |    
T  39929413 ggcttaaatatgtaaaacgtccatgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttactagccgt 39929314  T
Q  175 ttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
    |||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||    
T  39929313 ttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacg 39929249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 39927933 - 39928100
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttt-tcgt 173  Q
    ||||| |||||||||| |||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  ||||| |||| |     ||||    
T  39927933 ggctttaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttctaagttgccaatcgt 39928032  T
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    || |||| |  ||| ||||||||||||||||||||||||||    ||||||||||| ||||||| ||||    
T  39928033 tt-gcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtgg 39928100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 47864474 - 47864519
Alignment:
Q  60 cacttatttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||    
T  47864474 cacttattaaaagttggcttaaatatgcaaaccgtccctgtaattt 47864519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 472
Target Start/End: Complemental strand, 13508190 - 13508123
Alignment:
Q  405 cctctgtttatttgttctgcatctctcacctactaccttcttcatctttctgccaaatttttcatctc 472  Q
    ||||||||| |||||| | ||||||||||| | | ||||||||||||||||| ||| || ||||||||    
T  13508190 cctctgtttttttgttattcatctctcacccaattccttcttcatctttctgtcaatttcttcatctc 13508123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 52477636 - 52477675
Alignment:
Q  66 tttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  52477636 tttattttaggcttaaatatgcaaaccgtccctgtaattt 52477675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 15807656 - 15807686
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  15807656 ggcttaaatatgcaaaccgtccctgtaattt 15807686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 35022513 - 35022481
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||| ||||||||||||||||||||||||||||    
T  35022513 ttggtttaaatatgcaaaccgtccctgtaattt 35022481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 52502407 - 52502435
Alignment:
Q  77 cttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||    
T  52502407 cttaaatatgcaaaccgtccctgtaattt 52502435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 42775417 - 42775584
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttc 171  Q
    ||||||||||||||| ||| ||| |||||||||| |||  ||||||||| |||||| ||||||       ||||||||||  |||||||||| |  |  |    
T  42775417 tttggcttaaatatgtaaaacgttcctgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagc 42775516  T
Q  172 gttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
      ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||    
T  42775517 cgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacg 42775584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 42776877 - 42776818
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| ||||||||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  42776877 ggctttaatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatc 42776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 30381633 - 30381603
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  30381633 ggcttaaatatgcaaaccgtccctgtaattt 30381603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 35988855 - 35988885
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  35988855 ggcttaaatatgcaaaccgtccctgtaattt 35988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 30332282 - 30332342
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||||||||||| ||| |||||||||||||| ||| ||||||    ||||||||||||||    
T  30332282 tggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatc 30332342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 300
Target Start/End: Complemental strand, 9128 - 8903
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagct-tttttcgt 173  Q
    ||||| |||||||||| ||||||||||||||||||  ||||||||| |||||||||||||       |||||| |||  |||||||||| |     |||     
T  9128 ggctttaatatgcaaaacgtccctgtaattttgcgtgtttttgcaaatcgtccctgtatctttttttgtttcagaatcatccttgtaagttgccaatcg- 9030  T
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtggcttactgtgacctggcaaaaggagtgttacg 273  Q
    ||||||| | |||| ||||||||||||||||||||||||||    ||||| ||||| ||||||||||||   | |||||  |||||||||   ||||| |    
T  9029 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtgagttggcaaaagctttgttatg 8930  T
Q  274 tgtcaaaagagttggggagtggctaga 300  Q
    |||||| |||| ||  |||||||||||    
T  8929 tgtcaagagagatgatgagtggctaga 8903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 7691 - 7837
Alignment:
Q  68 taattttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttt 167  Q
    |||| |||| ||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||        |||||||||  |||||||||| |      
T  7691 taatattggtttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttatttcaaaatcatccttgtaagttac 7790  T
Q  168 tttcgttttgcaaatggtccttcccgttaactcccgttacaaaaacg 214  Q
    |  |  ||||||| |  ||| ||||||||||||||||||||||||||    
T  7791 tagccgtttgcaattcatccctcccgttaactcccgttacaaaaacg 7837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 8392856 - 8392695
Alignment:
Q  81 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagct-tttttcgttttgca 179  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  |||||||||| |     ||| ||||||    
T  8392856 aatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttgccaatcg-tttgca 8392758  T
Q  180 aatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    | |  ||| ||||||||||||||||||||||||||    ||||||||||| ||||||||||||    
T  8392757 attcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtgg 8392695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 45981407 - 45981571
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttcgtt 174  Q
    |||||||||||| ||| ||||| |||||||| |||  ||||||||| |||||| ||||||       ||||||||||  |||||||||| |  |  |  |    
T  45981407 ggcttaaatatgtaaaacgtccttgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagccgt 45981506  T
Q  175 ttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
    |||||| | |||| ||||||||||||||||||||||||||    ||| ||||||| |||||||||    
T  45981507 ttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggttgcagacggagacacacg 45981571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 20289652 - 20289619
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||||||    
T  20289652 tttggcttaaatatgcaaaccgtccctgtaattt 20289619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 45982871 - 45982799
Alignment:
Q  62 cttatttaattttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    |||||||| ||| ||||| |||||||||| |||||||||||||| ||   ||||||||| || ||||||||||    
T  45982871 cttatttattttaggctttaatatgcaaatcgtccctgtaatttcgcatgtttttgcaaatcatccctgtatc 45982799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 8391401 - 8391460
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||    
T  8391401 ggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccttgtatc 8391460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 26052240 - 26052205
Alignment:
Q  70 attttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26052240 attttggtttaaatatgcaaaccgtccctgtaattt 26052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 25165899 - 25165929
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  25165899 ggcttaaatatgcaaaccgtccctgtaattt 25165929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 25166805 - 25166775
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  25166805 ggcttaaatatgcaaaccgtccctgtaattt 25166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 54600129 - 54600163
Alignment:
Q  71 ttttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||| ||||||||||||||||||||||||||||    
T  54600129 ttttggtttaaatatgcaaaccgtccctgtaattt 54600163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 35325827 - 35325794
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||| |||||||||||||    
T  35325827 tttggcttaaatatgcaaactgtccctgtaattt 35325794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 20288886 - 20288918
Alignment:
Q  70 attttggcttaaatatgcaaaccgtccctgtaa 102  Q
    ||||||| |||||||||||||||||||||||||    
T  20288886 attttggtttaaatatgcaaaccgtccctgtaa 20288918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 35324994 - 35325026
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||| ||||||||||||    
T  35324994 ttggcttaaatatgcaaaccatccctgtaattt 35325026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 10510 - 10337
Alignment:
Q  70 attttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttt 169  Q
    |||| |||||||||||| ||| | || || |||||| |||  ||||||||| |||||||||||||       ||||||||||  ||||| |||| |  |     
T  10510 atttaggcttaaatatgtaaaacatctctataatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttataagttacta 10411  T
Q  170 tcgttttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtggc 243  Q
     |  ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||||||    
T  10410 gccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggc 10337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 9119 - 9187
Alignment:
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||  ||||||||||||    
T  9119 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacagagacacacgtgg 9187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 43546789 - 43546625
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttcgtt 174  Q
    |||||||||||| ||| |||||||||||||| |||  ||||||||| ||||||||||||        |||| |||||  |||||||||| |  |  |  |    
T  43546789 ggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatttttttttgttttaaaatcatccttgtaagttactagccgt 43546690  T
Q  175 ttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
    |||||| | |||| |||||||||||||||||||||||||     ||||||||||| |||||||||    
T  43546689 ttgcaattcgtccctcccgttaactcccgttacaaaaacattgtggtggcagacggagacacacg 43546625  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 28848548 - 28848617
Alignment:
Q  65 atttaattttggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| ||| |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||    
T  28848548 atttattttaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatc 28848617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 25008092 - 25008151
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||    
T  25008092 ggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatc 25008151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 43545342 - 43545509
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttt-tcgt 173  Q
    ||||| |||||||||| |||||||||||||| |||  ||||||||| |||||||||||||       ||||||||||  ||||| |||| |     ||||    
T  43545342 ggctttaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttctaagttgccaatcgt 43545441  T
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacgtgg 242  Q
    || |||| |  ||| ||||||||||||||||||||||||||    ||||||||||| ||||||| ||||    
T  43545442 tt-gcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtgg 43545509  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 28848653 - 28848718
Alignment:
Q  174 tttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacacg 239  Q
    ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||| |||||||||    
T  28848653 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacg 28848718  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 3843299 - 3843259
Alignment:
Q  65 atttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  3843299 attttattttggcttaaatatgcaaaccgtctctgtaattt 3843259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 4706632 - 4706664
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||||    
T  4706632 ttggcttaaatatgcaaaccgtccctgtaattt 4706664  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 105
Target Start/End: Complemental strand, 4707528 - 4707497
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||||    
T  4707528 tggcttaaatatgcaaaccgtccctgtaattt 4707497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 25009544 - 25009485
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| |||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||    
T  25009544 ggctttaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatc 25009485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 28850027 - 28849968
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| |||||||||| ||||||||||| || |||  ||||||||| |||||||||||||    
T  28850027 ggctttaatatgcaaaacgtccctgtaacttcgcgtgtttttgcaaatcgtccctgtatc 28849968  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 23966315 - 23966345
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  23966315 ggcttaaatatgcaaaccgtccctgtaattt 23966345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 26776310 - 26776340
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  26776310 ggcttaaatatgcaaaccgtccctgtaattt 26776340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 25008205 - 25008250
Alignment:
Q  198 ctcccgttacaaaaacggctaggtggcagacgaagacacacgtggc 243  Q
    |||||||||||||||||    |||||||||||||||||||||||||    
T  25008205 ctcccgttacaaaaacgttgtggtggcagacgaagacacacgtggc 25008250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 45278027 - 45277967
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||    
T  45278027 tggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatc 45277967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 35506987 - 35506824
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatcnnnnnnngtttcaaaattctccttgtaagcttttttcgtt 174  Q
    |||||||||||| ||| ||||  ||||||||||||  ||||||||| |||||||| ||||        |||||||||  |||||||||| |  |  |  |    
T  35506987 ggcttaaatatgtaaaacgtctttgtaattttgcgtgtttttgcaaatcgtccctatatctttttttatttcaaaatcatccttgtaagttactagccgt 35506888  T
Q  175 ttgcaaatggtccttcccgttaactcccgttacaaaaacggctaggtggcagacgaagacacac 238  Q
    |||||| | |||| ||||||||||||||||||||||||||    ||||||||||| ||||||||    
T  35506887 ttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacac 35506824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 11761035 - 11761068
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||||||    
T  11761035 tttggcttaaatatgcaaaccgtccctgtaattt 11761068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 26635508 - 26635540
Alignment:
Q  73 ttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||||    
T  26635508 ttggcttaaatatgcaaaccgtccctgtaattt 26635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 105
Target Start/End: Original strand, 23153547 - 23153578
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||||    
T  23153547 tggcttaaatatgcaaaccgtccctgtaattt 23153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 9899716 - 9899682
Alignment:
Q  71 ttttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||| |||||||||||||    
T  9899716 ttttggcttaaatatgcaaactgtccctgtaattt 9899682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 23154368 - 23154338
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  23154368 ggcttaaatatgcaaaccgtccctgtaattt 23154338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 26636321 - 26636288
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||| ||||||||||||||||||||||||||||    
T  26636321 tttggtttaaatatgcaaaccgtccctgtaattt 26636288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 3809691 - 3809655
Alignment:
Q  67 ttaattttggcttaaatatgcaaaccgtccctgtaat 103  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  3809691 ttaattttggcttaaatatgcaatccgtccttgtaat 3809655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 37586724 - 37586752
Alignment:
Q  77 cttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||    
T  37586724 cttaaatatgcaaaccgtccctgtaattt 37586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 9699225 - 9699185
Alignment:
Q  65 atttaattttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  9699225 atttaatttaggtttaaatatgcaaaccgtccctgtaattt 9699185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 6159754 - 6159784
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  6159754 ggcttaaatatgcaaaccgtccctgtaattt 6159784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 24051255 - 24051285
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  24051255 ggcttaaatatgcaaaccgtccctgtaattt 24051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 28302223 - 28302193
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  28302223 ggcttaaatatgcaaaccgtccctgtaattt 28302193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 28509850 - 28509880
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  28509850 ggcttaaatatgcaaaccgtccctgtaattt 28509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 29979284 - 29979254
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  29979284 ggcttaaatatgcaaaccgtccctgtaattt 29979254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 22353331 - 22353298
Alignment:
Q  72 tttggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||| ||||||||||||||||||||||||||||    
T  22353331 tttggtttaaatatgcaaaccgtccctgtaattt 22353298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 24052053 - 24052024
Alignment:
Q  76 gcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||    
T  24052053 gcttaaatatgcaaaccgtccctgtaattt 24052024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 105
Target Start/End: Complemental strand, 417 - 386
Alignment:
Q  74 tggcttaaatatgcaaaccgtccctgtaattt 105  Q
    ||||||||||||||||||||||||||||||||    
T  417 tggcttaaatatgcaaaccgtccctgtaattt 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 8329 - 8270
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccctgtatc 134  Q
    ||||| |||||||||| |||||||||||||| |||  ||||||||| |||||||| ||||    
T  8329 ggcttgaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctatatc 8270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 10306 - 10336
Alignment:
Q  75 ggcttaaatatgcaaaccgtccctgtaattt 105  Q
    |||||||||||||||||||||||||||||||    
T  10306 ggcttaaatatgcaaaccgtccctgtaattt 10336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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