View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_17 (Length: 435)
Name: NF17081_low_17
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 1846519 - 1846266
Alignment:
| Q |
5 |
taagtaataaattacccttgagcgtattgcacaaaaagctttgaatgaaattaattattgttcatgtatatgacatgtttggaactacggttaactgaag |
104 |
Q |
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| T |
1846519 |
taagtaataaattacccttgagcgtattgcacaaaaaactttgaatgaaattaattattgttcatgtatatgacatgtttggaactacagttaactgaag |
1846420 |
T |
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| Q |
105 |
tttgaaagcaaacgataattaactgccattttagagtgagcgatatatagttaattatcgttggagatattttcatcggtttgaagtgtctatgagcaaa |
204 |
Q |
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| T |
1846419 |
tttgaaagcaaacgataattaactgccattttagagtgagcgatatatagttaattatcgttggagatattttcatcggtttgaagagtctatgagcaaa |
1846320 |
T |
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| Q |
205 |
ctattgacgcctaaagagtaattttctttaacaaaacattaaggatttcataaa |
258 |
Q |
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| T |
1846319 |
ctattgacgcttaaagagtaattttcttttacaaaacattaaggatttcataaa |
1846266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 257 - 435
Target Start/End: Complemental strand, 1846176 - 1845998
Alignment:
| Q |
257 |
aacatgtatcgtaagggcacaagttagcattttcattctttaaattagcgttcactccatatttaaaattgctatttcctcccacttttgagtagatggg |
356 |
Q |
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| T |
1846176 |
aacatgtgtcttaagggcacaagttagcattttcattctttaaattagccttcactccatatttaaaattgctatttcctcccacttttgagtagatggg |
1846077 |
T |
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| Q |
357 |
ccgcttgcaggttgggttgatttctgctcacttttgtctcattccaaaattttgattaggcccagaatgataaccattc |
435 |
Q |
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| T |
1846076 |
ccgcttgcaggttgggttgatttcagcccacttttgtctcattccaaaattttgattaggcccagcttgataaccattc |
1845998 |
T |
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