View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_18 (Length: 426)
Name: NF17081_low_18
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 2 - 417
Target Start/End: Original strand, 10067799 - 10068214
Alignment:
| Q |
2 |
tgatttgtatttattgaaaaattcacattctattacattgataacttaagaaactaaacttctgaataagtacttttaacttttgattggtccttaagga |
101 |
Q |
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| T |
10067799 |
tgatttgtatttattgaaaaattcacattctattacattgataacttaagaaactaaacttctgaataagtacttttaacttttgattggtccttaagga |
10067898 |
T |
|
| Q |
102 |
actccttagaatatgcttaaatnnnnnnntcactttgagttctgatacctgaggaagtggaagaattgatagaatgtcaatgatgaagtgagaacttaag |
201 |
Q |
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| T |
10067899 |
actccttagaatatgcttaaataaaaaaatcactttgagttctgatacctgaggaagtggaagaattgatagaatgtcaatgatgaagtgagaacttaag |
10067998 |
T |
|
| Q |
202 |
tatctcattgctatagcaaaaggatcatcaaccggctctccccttccaaaaatgcgcgaagaaggtgcaataaacccggttcgaaactgaaagacgatgc |
301 |
Q |
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| T |
10067999 |
tatctcattgctatagcaaaaggatcatcaaccggctctccccttccaaaaatgcgcgaagaaggtgcaataaacccggttcgaaactgaaagacgatgc |
10068098 |
T |
|
| Q |
302 |
gaataatgtagaaaagatcgaaaaacgtccgaagaacactagcagtaatcttcaatgttccattcaaattaaggcattttctctggtcatcaatcacagg |
401 |
Q |
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| T |
10068099 |
gaataatgtagaaaagatcgaaaaacgtccgaagaacactagcagtaatcttcaatgttccattcaaattaaggcattttctctggtcatcaatcacagg |
10068198 |
T |
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| Q |
402 |
gatgtaaaagaataat |
417 |
Q |
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| T |
10068199 |
gatgtaaaagaataat |
10068214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 145 - 381
Target Start/End: Complemental strand, 48464409 - 48464173
Alignment:
| Q |
145 |
gatacctgaggaagtggaagaattgatagaatgtcaatgatgaagtgagaacttaagtatctcattgctatagcaaaaggatcatcaaccggctctcccc |
244 |
Q |
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|||||||| || ||||||| ||||||||||||||||| |||||| |||||||| |||||||| | ||| || | |||||| ||||| | || || | |
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| T |
48464409 |
gatacctgtggtagtggaataattgatagaatgtcaacgatgaaatgagaactcaagtatcttttcattatggcgacaggatcgtcaacgagttcacctc |
48464310 |
T |
|
| Q |
245 |
ttccaaaaatgcgcgaagaaggtgcaataaacccggttcgaaactgaaagacgatgcgaataatgtagaaaagatcgaaaaacgtccgaagaacactagc |
344 |
Q |
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| T |
48464309 |
ttccaaaaacacgagaagaaggcgcaataaatccggttctgaactgaaagatgatgcgaagaatgtagaaaagatcgaagaacgtgcgaagaacactgat |
48464210 |
T |
|
| Q |
345 |
agtaatcttcaatgttccattcaaattaaggcatttt |
381 |
Q |
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| T |
48464209 |
agtagtctgcaatgttccatccaaatcaagacatttt |
48464173 |
T |
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