View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_19 (Length: 417)
Name: NF17081_low_19
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 25858382 - 25857994
Alignment:
| Q |
9 |
gagatgaataggcaatgcaacacatgataagatttataataatagaaaggaaaccaaattctgaaagagtcatccttagaaaatatcaatgcactctatc |
108 |
Q |
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| T |
25858382 |
gagaagaataggaaatgcaacacatgataagatttataataatagaagggaaaccaaattctgaaagagtcatccttagaaaatatcaatgcactctatc |
25858283 |
T |
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| Q |
109 |
ataagctttcttgaagtaaactttaaacattaaaaggcctttcttacattcttcttgtgcaataattgcattgtaaaaagtatctctgttaagaataaaa |
208 |
Q |
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| T |
25858282 |
ataagctttcttgaagtaaactttaaacattaaaaggcctttcttacattcttcttgtgcaataattgcagtgtaaaaagtatctctgttaggaat-aaa |
25858184 |
T |
|
| Q |
209 |
gaggtctgaagagagtcaatgaactaatctaagcaaggtttgatacgctagataagcaccttagaattagtcttgtgaaaaatgttgcacattctaattg |
308 |
Q |
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||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25858183 |
gagctctgaagagggtcaatgaactaatctatgcaaggtttgatacgctagataagcaccttagaattagtcttgtgaaaaatgttgcacattctaattg |
25858084 |
T |
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| Q |
309 |
gtctaaaatccgcaagactcggcaagagtaggatcaatattatcaatggcaataggtttagataaaatagcacttattaaacattctaat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25858083 |
gtctaaaatccgcaagactcggcaagagtaggatcaatattatcaatggaaataggtttagataaaatagcacttattaaacattctaat |
25857994 |
T |
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