View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_low_2 (Length: 707)

Name: NF17081_low_2
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_low_2
NF17081_low_2
[»] chr5 (4 HSPs)
chr5 (381-576)||(20676112-20676308)
chr5 (19-90)||(26526545-26526617)
chr5 (19-88)||(42559856-42559925)
chr5 (19-90)||(1271129-1271201)
[»] chr8 (3 HSPs)
chr8 (319-577)||(16078098-16078353)
chr8 (61-90)||(39709648-39709677)
chr8 (24-88)||(7882894-7882957)
[»] chr2 (9 HSPs)
chr2 (88-143)||(23757418-23757473)
chr2 (246-317)||(23757527-23757598)
chr2 (19-90)||(39417475-39417546)
chr2 (19-88)||(10202202-10202271)
chr2 (19-88)||(25219663-25219732)
chr2 (22-88)||(5887603-5887669)
chr2 (17-88)||(6590913-6590984)
chr2 (46-90)||(18741422-18741466)
chr2 (19-90)||(32517842-32517914)
[»] chr4 (4 HSPs)
chr4 (19-90)||(24870629-24870701)
chr4 (19-90)||(33530251-33530323)
chr4 (20-88)||(42550449-42550518)
chr4 (19-71)||(11311570-11311622)
[»] chr1 (4 HSPs)
chr1 (21-88)||(43837122-43837188)
chr1 (19-71)||(43025918-43025971)
chr1 (19-90)||(13116958-13117030)
chr1 (19-90)||(27078580-27078651)
[»] chr7 (4 HSPs)
chr7 (19-90)||(12645322-12645394)
chr7 (513-567)||(9068646-9068701)
chr7 (20-90)||(9506866-9506937)
chr7 (19-90)||(46021455-46021527)
[»] scaffold0064 (1 HSPs)
scaffold0064 (522-565)||(26365-26408)
[»] chr3 (1 HSPs)
chr3 (19-88)||(48191126-48191195)
[»] scaffold0548 (1 HSPs)
scaffold0548 (19-71)||(6780-6832)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 381 - 576
Target Start/End: Original strand, 20676112 - 20676308
Alignment:
Q  381 agggcgatcctagagtgctttggaagctcccgagggtatatgtgcaatctgtgtttagagtgtttccctaggggcgattttgaaatgttt-aatagtccc 479  Q
    ||||||||||||||||| | ||||||| |||| || ||||||||  ||||||||||||||  ||||| ||||| |||| || |||||||| |||||||||    
T  20676112 agggcgatcctagagtgttctggaagcccccggggatatatgtgtgatctgtgtttagagcatttccttaggg-cgatcttaaaatgttttaatagtccc 20676210  T
Q  480 taagggtacatgtatgatctgtatacaggttact-ggtccatatagccccccaagcatgggtcttggcacaaggcgagatggtttgtaatggtgtgaa 576  Q
    ||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||| || |||||    
T  20676211 taagggtacatgtatcatatgtgtacaggttacttggtccatatagccccccaagcatgagccttgggacaaggcgagatggtttgtaaaggcgtgaa 20676308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 26526545 - 26526617
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||| | || |||||| |||||| |||| | ||||||||||||||| |||||||||||||||    
T  26526545 gaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtttatga 26526617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42559925 - 42559856
Alignment:
Q  19 gaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    ||||||||||||||||||||||||| | ||||||||| | | |||||||||| |||| |||||||||||||    
T  42559925 gaaattgttaggccggatgtaatgatcgaggttcaaattccggtacctccac-ttatgtgtgtgagtttat 42559856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 1271129 - 1271201
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    |||||| ||| ||||||||| |||||| |||||| ||   || |||||||| |||||||||||||||||||||    
T  1271129 gaaattattaagccggatgttatgaccgaggttcgaatcccaatacctccattttatatgtgtgagtttatga 1271201  T

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Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 319 - 577
Target Start/End: Original strand, 16078098 - 16078353
Alignment:
Q  319 attgtcttgctttgaaaaattcggttatgcttggtattattttgtctttggaggattcaccaagggcgatcctagagtgctttggaagctcccgagggta 418  Q
    |||| ||| |||| ||||||| ||||||||| ||||||||||||      |||||| | || |||||||||||||| || | ||||||| ||| ||| ||    
T  16078098 attggctttctttaaaaaattaggttatgctaggtattattttg------gaggatcctcctagggcgatcctagattgttctggaagcccccaaggata 16078191  T
Q  419 tatgtgcaatctgtgtttagagtgtttccctag-gggcgattttgaaatgttt-aatagtccctaagggtacatgtatgatctgtatacaggttact-gg 515  Q
    |||||   ||||||||||||||  ||| ||||  ||||||| || |||||||| |||| || | |||||||||||||  |||||| |||| |||||| ||    
T  16078192 tatgtttgatctgtgtttagagcattttcctatagggcgatcttaaaatgttttaatattcgccaagggtacatgtaccatctgtgtacatgttacttgg 16078291  T
Q  516 tccatatagccccccaagcatgggtcttggcacaaggcgagatggtttgtaatggtgtgaat 577  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||| || ||||||    
T  16078292 tccatatagtcccccaagcatgagtcttgggacaaggcgagatggtttgtaaaggcgtgaat 16078353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 39709677 - 39709648
Alignment:
Q  61 tacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||||||||||||||||||    
T  39709677 tacctccactttatatgtgtgagtttatga 39709648  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 7882894 - 7882957
Alignment:
Q  24 tgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    ||||||||||||||| |||||||||||| ||||   |||||| ||| |||| |||||||||||||    
T  7882894 tgttaggccggatgtgatgaccaggttcgaactctggtaccttcac-ttatgtgtgtgagtttat 7882957  T

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Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 23757418 - 23757473
Alignment:
Q  88 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23757418 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 23757473  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 23757527 - 23757598
Alignment:
Q  246 tagccagccttttatatatttggttgctggtgctcgtagtactattaagttttagccaattttcaataaatt 317  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||    
T  23757527 tagctagccttttatatatttggttgctggtgctcgttgtactattaagttttagcctctttttaataaatt 23757598  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 39417475 - 39417546
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    |||||||||||||||||||| |||||  ||||| |||| |  || ||||||||||| |||||||||||||||    
T  39417475 gaaattgttaggccggatgtcatgacggggttcgaactccgatatctccactttatgtgtgtgagtttatga 39417546  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 10202202 - 10202271
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    |||||||||||||||||||  |||| | || ||| ||||||||||||||||| ||||||||||||||||||    
T  10202202 gaaattgttaggccggatgctatgatcggggttcgaacttcagtacctccac-ttatatgtgtgagtttat 10202271  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25219732 - 25219663
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    ||||||||||||||||| || |||||  | ||| ||||   |||||||||||||||||||||||||||||    
T  25219732 gaaattgttaggccggacgtcatgacgggattcgaactcaggtacctccactttatatgtgtgagtttat 25219663  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 5887603 - 5887669
Alignment:
Q  22 attgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    ||||||||||||||||| ||||||| ||||| ||||   |||||||||| ||||||||||||||||||    
T  5887603 attgttaggccggatgtcatgaccagggttcgaactctggtacctccac-ttatatgtgtgagtttat 5887669  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 6590913 - 6590984
Alignment:
Q  17 cagaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    |||||||||||||||||||||| ||||||  ||||||||   | |||||||||| |||| |||||||||||||    
T  6590913 cagaaattgttaggccggatgttatgaccggggttcaaatcccggtacctccac-ttatgtgtgtgagtttat 6590984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 18741466 - 18741422
Alignment:
Q  46 aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||| | ||||||||||||| | |||||||||||||||    
T  18741466 aggttcaaactccggtacctccactttgtgtgtgtgagtttatga 18741422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 32517914 - 32517842
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||| ||| || |||||| |||||| |||  | ||||||||||||| | |||||||||||||||    
T  32517914 gaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtgagtttatga 32517842  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 24870629 - 24870701
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||||| ||||||||| |||||| ||| || ||||||||||||||  |||||||||||||||    
T  24870629 gaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtgagtttatga 24870701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33530251 - 33530323
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||||| ||||| | |||||||||||||||    
T  33530251 gaaattgttaggccggacgtcatgaccgaggttcaaacctcagtacctctactttgtgtgtgtgagtttatga 33530323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 42550518 - 42550449
Alignment:
Q  20 aaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    ||||||||||||||||||  |||||| || ||| ||   ||||||||||||||||||||||| |||||||    
T  42550518 aaattgttaggccggatgccatgaccgggattcgaatcccagtacctccactttatatgtgtaagtttat 42550449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 11311622 - 11311570
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactt 71  Q
    |||||||||||||||||||| |||||  ||||| |||| | ||||||||||||    
T  11311622 gaaattgttaggccggatgtcatgacggggttcgaactccggtacctccactt 11311570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 43837122 - 43837188
Alignment:
Q  21 aattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    |||||||||||||||||| ||||||||||||||||  | ||||||||||||||| ||||| |||||||    
T  43837122 aattgttaggccggatgttatgaccaggttcaaac-ccggtacctccactttatgtgtgtaagtttat 43837188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 43025918 - 43025971
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactt 71  Q
    |||||||||||||||||||  |||||| || ||| |||||||||||||||||||    
T  43025918 gaaattgttaggccggatgccatgacctgggttcgaacttcagtacctccactt 43025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 13116958 - 13117030
Alignment:
Q  19 gaaattgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||| ||| || ||||||| ||||| |||| | |||||| |||||| | |||||||||||||||    
T  13116958 gaaattgttaggctggacgtcatgaccaaggttcgaactccggtaccttcactttgtgtgtgtgagtttatga 13117030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 27078580 - 27078651
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    |||||||||||||||||||| ||||||  ||||| |||  | |||||||||| |||| |||||||||||||||    
T  27078580 gaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttatga 27078651  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 12645394 - 12645322
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||||| ||||||||| |||||| |||  | ||||||||||||||| |||||| ||||||||    
T  12645394 gaaattgttaggccggacgtaatgaccgaggttcgaacccctgtacctccactttatgtgtgtgggtttatga 12645322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 513 - 567
Target Start/End: Complemental strand, 9068701 - 9068646
Alignment:
Q  513 tggtccatatagccccccaagcatgggtcttg-gcacaaggcgagatggtttgtaa 567  Q
    ||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||    
T  9068701 tggtccatatagccccccaagcatgagtcttgagaacaaggcgatatggtttgtaa 9068646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 9506937 - 9506866
Alignment:
Q  20 aaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    ||||||||||||||||  | |||||| |||||| |||| | ||||||||||||| | |||||||||||||||    
T  9506937 aaattgttaggccggacatcatgaccgaggttcgaactccggtacctccactttgtgtgtgtgagtttatga 9506866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 46021527 - 46021455
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 90  Q
    |||||||||||||||||||| ||||||  ||||| |||  | ||||||||| ||| | |||||||||||||||    
T  46021527 gaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccattttgtgtgtgtgagtttatga 46021455  T

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Target: scaffold0064 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 565
Target Start/End: Original strand, 26365 - 26408
Alignment:
Q  522 tagccccccaagcatgggtcttggcacaaggcgagatggtttgt 565  Q
    |||||||||||||||| | ||||| |||||||||||||||||||    
T  26365 tagccccccaagcatgagccttggtacaaggcgagatggtttgt 26408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 48191126 - 48191195
Alignment:
Q  19 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 88  Q
    |||||||||||||||||||| ||||||  ||||| |||| |||||||||||| || | |||||||||||||    
T  48191126 gaaattgttaggccggatgtcatgaccggggttcgaactccagtacctccac-ttgtgtgtgtgagtttat 48191195  T

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Target: scaffold0548 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 6780 - 6832
Alignment:
Q  19 gaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactt 71  Q
    |||||||||||||||||||| |||||  ||||| |||| | ||||||||||||    
T  6780 gaaattgttaggccggatgtcatgacggggttcgaactccggtacctccactt 6832  T

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