View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_low_20 (Length: 409)

Name: NF17081_low_20
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_low_20
NF17081_low_20
[»] chr7 (12 HSPs)
chr7 (57-402)||(19637311-19637644)
chr7 (31-130)||(18953259-18953358)
chr7 (31-130)||(18983306-18983405)
chr7 (31-130)||(18997952-18998051)
chr7 (68-120)||(24391074-24391126)
chr7 (31-112)||(18988126-18988207)
chr7 (274-351)||(19597799-19597876)
chr7 (70-123)||(22021051-22021104)
chr7 (16-79)||(19598074-19598137)
chr7 (65-130)||(19351387-19351452)
chr7 (72-121)||(22036771-22036820)
chr7 (64-121)||(29880927-29880984)
[»] chr4 (4 HSPs)
chr4 (57-130)||(3561309-3561382)
chr4 (64-117)||(3565397-3565450)
chr4 (69-117)||(1686649-1686697)
chr4 (65-117)||(3557380-3557432)
[»] chr3 (2 HSPs)
chr3 (62-117)||(3625412-3625467)
chr3 (73-130)||(36339792-36339849)
[»] scaffold0707 (1 HSPs)
scaffold0707 (65-130)||(5047-5112)
[»] chr6 (1 HSPs)
chr6 (65-130)||(33568653-33568718)
[»] chr1 (2 HSPs)
chr1 (68-117)||(39379425-39379474)
chr1 (86-130)||(4366837-4366881)
[»] chr2 (3 HSPs)
chr2 (67-139)||(18921070-18921141)
chr2 (64-114)||(20980251-20980301)
chr2 (65-121)||(20712872-20712928)
[»] chr5 (1 HSPs)
chr5 (66-120)||(42297805-42297859)
[»] scaffold0097 (1 HSPs)
scaffold0097 (65-121)||(16711-16767)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 57 - 402
Target Start/End: Complemental strand, 19637644 - 19637311
Alignment:
Q  57 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcctgttttccatacccattcattacatga 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19637644 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcctgttttccatacccattcattacatga 19637545  T
Q  157 aagtagtatcaaacatggcgtgcatgtgaatgtgcatgtgaatgggactcttaactggttgggcattcaaagtgagttccataatgaacatcaaattgat 256  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19637544 aagtagtatcaaacatggcgtgcatgtgaatg------------ggactcttaactggttgggcattcaaagtgagttccataatgaacatcaaattgat 19637457  T
Q  257 tggaaacatattagtaatgacaaatttgtgatcatttcgcttgatttgagtacagaggcatactgtcaattgctgccccctcgaggttttgataaagttt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19637456 tggaaacatattagtaatgacaaatttgtgatcatttcgcttgatttgagtacagaggcatactgtcaattgctgccccctcgaggttttgataaagttt 19637357  T
Q  357 catgtgatcaaccaactcttgttgtgttgctggactccctttgctt 402  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  19637356 catgtgttcaaccaactcttgttgtgttgctggactccctttgctt 19637311  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 18953358 - 18953259
Alignment:
Q  31 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    ||||||||||||||||||| ||| || ||  ||||||||||||||||| | |||||| ||||| ||||||||| ||||||||||||||||| ||| ||||    
T  18953358 ttataagattgtggcgttctatgaaaagatcaacgaggtgagagttttcaattttggcgataatgtttggagacatattcaaagttttcctgtggctcct 18953259  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 18983405 - 18983306
Alignment:
Q  31 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| ||||||||||||||||| ||| ||||    
T  18983405 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcctgtggctcct 18983306  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 18998051 - 18997952
Alignment:
Q  31 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| ||||||||||||||||| ||| ||||    
T  18998051 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcctgtggctcct 18997952  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 24391074 - 24391126
Alignment:
Q  68 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 120  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  24391074 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 18988207 - 18988126
Alignment:
Q  31 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaa 112  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| ||||||||    
T  18988207 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaa 18988126  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 19597876 - 19597799
Alignment:
Q  274 tgacaaatttgtgatcatttcgcttgatttgagtacagaggcatactgtcaattgctgccccctcgaggttttgataa 351  Q
    |||| ||||||||||||| | ||||||||||| ||| ||| |||||  ||| ||| |||||||||| |||||||||||    
T  19597876 tgaccaatttgtgatcatcttgcttgatttgattacggagacataccatcagttgttgccccctcggggttttgataa 19597799  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 22021051 - 22021104
Alignment:
Q  70 gagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctat 123  Q
    |||||| |||||||| || ||||| ||||||||||||||| |||||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttttcctat 22021104  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19598137 - 19598074
Alignment:
Q  16 taattcagttgacacttataagattgtggcgttccatggaatgactaacgaggtgagagttttt 79  Q
    ||||||| |||||||||| ||||||||||| ||||||  || || |||||| ||||||||||||    
T  19598137 taattcaattgacacttacaagattgtggcattccatctaaagaataacgaagtgagagttttt 19598074  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 19351452 - 19351387
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    ||||||| ||||||||||||  ||||||| ||||||||| |||||| |||||| || || ||||||    
T  19351452 gaggtgaaagtttttagtttgagtgataatgtttggagagatattccaagtttaccgattgttcct 19351387  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 22036771 - 22036820
Alignment:
Q  72 gagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 121  Q
    |||| |||||||| || ||||| ||||||||||||||| |||||||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcct 22036820  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 29880927 - 29880984
Alignment:
Q  64 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 121  Q
    ||||||||||||| | | | |||||||| | ||||||||||||||| |||||||||||    
T  29880927 cgaggtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 3561382 - 3561309
Alignment:
Q  57 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    |||||| ||||||||||| |||  ||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  3561382 tgactagcgaggtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcctattgttcct 3561309  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 3565397 - 3565450
Alignment:
Q  64 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 117  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  3565397 cgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  69 tgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 117  Q
    |||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 3557380 - 3557432
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 117  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  3557380 gaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 3625412 - 3625467
Alignment:
Q  62 aacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 117  Q
    |||||||||| |||| | |||||||||||||| ||||||||||||||| |||||||    
T  3625412 aacgaggtgaaagttctcagttttggtgataatgtttggagaaatattgaaagttt 3625467  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 36339792 - 36339849
Alignment:
Q  73 agtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    |||||||||||||||||||||   ||||||| ||||||||||||| ||| ||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcct 36339849  T

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Target: scaffold0707 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 5047 - 5112
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    |||||| ||||||| ||||| |||||||    |||||||||||||||||||||||| |||||||||    
T  5047 gaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttttccaatggttcct 5112  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 33568653 - 33568718
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    |||||| ||||||| ||||| |||||||    |||||||||||||||||||||||| |||||||||    
T  33568653 gaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttttccaatggttcct 33568718  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 39379474 - 39379425
Alignment:
Q  68 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 117  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  39379474 gtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 4366881 - 4366837
Alignment:
Q  86 ggtgataaagtttggagaaatattcaaagttttcctatggttcct 130  Q
    |||||||| ||||||||| ||||| ||||||||||||| ||||||    
T  4366881 ggtgataacgtttggagagatattgaaagttttcctattgttcct 4366837  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 18921141 - 18921070
Alignment:
Q  67 ggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatggttcctgttttccat 139  Q
    ||||| |||||| |||||  ||||||| ||||||||  ||||||||||||||||||| ||||| |||||||||    
T  18921141 ggtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttttcctattgttcc-gttttccat 18921070  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 20980251 - 20980301
Alignment:
Q  64 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaag 114  Q
    ||||||||||||||| | | ||||||||||| ||||||||| |||||||||    
T  20980251 cgaggtgagagttttcactcttggtgataaattttggagaattattcaaag 20980301  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 20712928 - 20712872
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 121  Q
    ||||| |||||||| | ||| || ||||| |||||||||||||||||| ||||||||    
T  20712928 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 20712872  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 42297805 - 42297859
Alignment:
Q  66 aggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 120  Q
    |||||||||| |||||||| |  ||||| |||||||||| |||||||||||||||    
T  42297805 aggtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 16767 - 16711
Alignment:
Q  65 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 121  Q
    ||||| |||||||| | ||| || ||||| |||||||||||||||||| ||||||||    
T  16767 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 16711  T

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