View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_21 (Length: 407)
Name: NF17081_low_21
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_21 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 45197945 - 45198343
Alignment:
| Q |
1 |
cgtctaatggtttctgcactgtcatgccttggaggatcaaagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45197945 |
cgtctaatggtttctgcactgtcatgccttggaggatcaaagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctg |
45198044 |
T |
|
| Q |
101 |
gcacttcctaaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45198045 |
gcacttcctaaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaataaaagcttacttgttt |
45198144 |
T |
|
| Q |
201 |
gccaacagcaagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45198145 |
gccaacagcaagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctctttacatcttctctaaggttgcacagatcaataatc |
45198244 |
T |
|
| Q |
301 |
taaaaggaaattcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctatgct |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45198245 |
taaaaggaaattcaaaaatgtattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgct |
45198343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 15868483 - 15868445
Alignment:
| Q |
3 |
tctaatggtttctgcactgtcatgccttggaggatcaaa |
41 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
15868483 |
tctaatggtttcagcactgtcatgcctaggaggatcaaa |
15868445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 110 - 390
Target Start/End: Complemental strand, 30340921 - 30340641
Alignment:
| Q |
110 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30340921 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatcataagtcatcattaataagaagtaagaaaagcttacttgtttaccaacagc |
30340822 |
T |
|
| Q |
210 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
309 |
Q |
| |
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||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
30340821 |
aagggaagagagactgcgttcagcaaatttgtcaataatggaaatagctctccttctcacatcttctctaatgctgcacaattcaataatctaaaaggaa |
30340722 |
T |
|
| Q |
310 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgc |
390 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30340721 |
attcaaaaaattattgtcatgtgaaacaatagatgccaaatatgactggtgaaaggtctatttgtttacctcctccggtgc |
30340641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 110 - 390
Target Start/End: Original strand, 18988851 - 18989131
Alignment:
| Q |
110 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
18988851 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatccaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
18988950 |
T |
|
| Q |
210 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
309 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
18988951 |
aagggaagagagactgtgttcagcaaatttatcaataatggaaatagctctccttctcacatcttctctaacgttgcacaaatcaataatctaaaaggaa |
18989050 |
T |
|
| Q |
310 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgc |
390 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
18989051 |
attcaaaaacttattgtcatgtgaaacaatagatgccaaatatgaccggtgaaaggtctatttgtttacctcctccggtgc |
18989131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 110 - 390
Target Start/End: Complemental strand, 23916671 - 23916392
Alignment:
| Q |
110 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
209 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
23916671 |
aaaaaatatgcataattcctcataaaat-ttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
23916573 |
T |
|
| Q |
210 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
309 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
23916572 |
aagggaagagagactgcgttcagcaaatttatcaataatggaaatagctctccttctcacatcttctctaacgttgcacaaatcaataatctaaaaggaa |
23916473 |
T |
|
| Q |
310 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgc |
390 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
23916472 |
attcaaaaacttattgtcatgtgaaacaatagatgccaaatatgaccggtgaaaggtctatttgtttacctcctccggtgc |
23916392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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