View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_23 (Length: 396)
Name: NF17081_low_23
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 34807283 - 34807634
Alignment:
| Q |
24 |
tcctattgattgagtgattttgataaagtttaaaggcggtttaataaaatggcttttgtagcccatcaaccacaggtatggtatatttacttcttcaatg |
123 |
Q |
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| T |
34807283 |
tcctattgattgagtgattttgataaagtttaaaggcggtttaataaaatggcttttgttgcccatcaaccacaggtatggtatatttacttcttcaatg |
34807382 |
T |
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| Q |
124 |
actattattaaatttgcaatttaattttgatctttccattgatggctattacttattatcaggaaaataagccttatatataagcacttatatgatcaac |
223 |
Q |
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| T |
34807383 |
actattattaaattttcaatttaattttgatctttccattgatggctattacttattatcaggaaaataagccttatatataagcacttatatgatcaac |
34807482 |
T |
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| Q |
224 |
atttctgcttataagcgtttagttaagttaattatccaaacaggt-ctaaactcaagtttgacaagtctgatttctaataacaaagtttatatccggaat |
322 |
Q |
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| T |
34807483 |
atttctgcttataagcgtttagttaagttaattatccaaacaggtcctaaactcaagtttgacaagtctgatttctaataacaaagtttatatccggaat |
34807582 |
T |
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| Q |
323 |
tgttataaattttgattttgattttgcaatcacaagttcacaactacctgtg |
374 |
Q |
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| T |
34807583 |
tgttataaattttgattttgattttgcaatcacaagttcacaactacctgtg |
34807634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 34563199 - 34563144
Alignment:
| Q |
196 |
cttatatataagcacttatatgatcaacatttctgcttataagcgtttagttaagtt |
252 |
Q |
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| T |
34563199 |
cttatatataagcacttatatgataaatgtttatgc-tataagcgtttaattaagtt |
34563144 |
T |
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