View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_27 (Length: 375)
Name: NF17081_low_27
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 37792788 - 37793130
Alignment:
| Q |
16 |
ataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatga |
115 |
Q |
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| T |
37792788 |
ataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatggagaattttagtgagaatttctggacagagccatatatga |
37792887 |
T |
|
| Q |
116 |
tagacaattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtcc |
215 |
Q |
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| T |
37792888 |
tagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtcc |
37792987 |
T |
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| Q |
216 |
acaatcttcgcaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaattcagtttttgatggcagtgaa |
315 |
Q |
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| T |
37792988 |
actatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaattcagtttttgatggtagtgaa |
37793087 |
T |
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| Q |
316 |
cttccggttatggatgcattcatagagactgtgagtgaatttt |
358 |
Q |
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| T |
37793088 |
cttccgtttatggatgcattcatggagactgtgagtgaatttt |
37793130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 37793272 - 37793534
Alignment:
| Q |
32 |
caattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttctggacagagccatatatgatagacaattcatatgt |
131 |
Q |
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| T |
37793272 |
caattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttcacattt |
37793371 |
T |
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| Q |
132 |
cccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaacca |
231 |
Q |
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| T |
37793372 |
ccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacca |
37793471 |
T |
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| Q |
232 |
ttttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
294 |
Q |
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| T |
37793472 |
tcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
37793534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 37793133 - 37793229
Alignment:
| Q |
97 |
tggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaaca |
193 |
Q |
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| T |
37793133 |
tggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaaca |
37793229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 37809272 - 37809388
Alignment:
| Q |
139 |
aatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaa |
238 |
Q |
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| T |
37809272 |
aatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgatttcaatattacgagtccaccatcttcacaaccatctacaa |
37809371 |
T |
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| Q |
239 |
gtggattctcttgcata |
255 |
Q |
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| T |
37809372 |
gtgcatcctcttgcata |
37809388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 37792672 - 37792794
Alignment:
| Q |
137 |
ataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttc |
236 |
Q |
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| T |
37792672 |
ataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgcaaatcaaatatctccgcaaccatcttc |
37792771 |
T |
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| Q |
237 |
aagtggattctcttgcataacaa |
259 |
Q |
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| T |
37792772 |
aagcgaattgtcttgcataacaa |
37792794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 37809493 - 37809533
Alignment:
| Q |
93 |
tttctggacagagccatatatgatagacaattcatatgtcc |
133 |
Q |
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| T |
37809493 |
tttctggacagagccatatataatagacagtttatatgtcc |
37809533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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