View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17081_low_29 (Length: 367)
Name: NF17081_low_29
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 14761897 - 14762256
Alignment:
| Q |
1 |
ctaaaggcacaagttatcatttcccttattataattaacgcgtaatatgtttaatgatattgactttaatgaaacatggttgtaattaataagaatatag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14761897 |
ctaatggcacaagttatcatttcccttattataattaacgcgtaatatgtttaatgatattgactttaatgaaacatggttgtaattaataagaatttag |
14761996 |
T |
|
| Q |
101 |
acagtgttactttaatgaaaaccatgatgaatgtgtttaaatgacccctaaattttgtccgatttaatttgttgtaacaacatcgtagcaattgcaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14761997 |
acagtgttactttaatgaaaaccatgatgaatgtgtttaaatgacccctaaattttgtccgatttaatttgttgtaacaacatcgtagcaattgcaacca |
14762096 |
T |
|
| Q |
201 |
gaaatttggtttaaagttgatttaaatttcccaacttttctttttcacttgaaatctcaaaaccaggtgcctttactctttatctttaatttgaacgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14762097 |
gaaatttggtttaaagttgatttaaatttcccaacttttctttttcacttgaaatctcaaaaccaggtgcctttactctttatctttaatttgaacgata |
14762196 |
T |
|
| Q |
301 |
ccgaaacccaaaatgatattttccttttttgttaacaacaaacatactaaacctatgcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14762197 |
ccgaaacccaaaatgatattttccttttttgttaacaacaaacatactaaacctatgcta |
14762256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 17566711 - 17566352
Alignment:
| Q |
1 |
ctaaaggcacaagttatcatttcccttattataattaacgcgtaatatgtttaatgatattgactttaatgaaacatggttgtaattaataagaatatag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17566711 |
ctaagggcacaagttatcatttcccttattataattaacgcgtaatatgtttaatgatattgactttaatgaaacatggttgtaattaataagaatctag |
17566612 |
T |
|
| Q |
101 |
acagtgttactttaatgaaaaccatgatgaatgtgtttaaatgacccctaaattttgtccgatttaatttgttgtaacaacatcgtagcaattgcaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17566611 |
acagtgttactttaatgaaaaccatgatgaatgtgtttaaatgacccctaaattttgtccgatttaatttgttgtaacaacatcgtagcaattgcaacca |
17566512 |
T |
|
| Q |
201 |
gaaatttggtttaaagttgatttaaatttcccaacttttctttttcacttgaaatctcaaaaccaggtgcctttactctttatctttaatttgaacgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17566511 |
gaaatttggtttaaagttgatttaaatttcccaacttttctttttcacttgaaatctcaaaaccaggtgcctttactctttatctttaatttgaacgata |
17566412 |
T |
|
| Q |
301 |
ccgaaacccaaaatgatattttccttttttgttaacaacaaacatactaaacctatgcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17566411 |
ccgaaacccaaaatgatattttccttttttgttaacaacaaacatactaaacctatgcta |
17566352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University