View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_3 (Length: 609)
Name: NF17081_low_3
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 2 - 594
Target Start/End: Complemental strand, 3484063 - 3483468
Alignment:
| Q |
2 |
atatttctaaatcccnnnnnnncaaagtcaagagtagcatctatcgtatattccctttgaatctcctctaaaattttgaatgcatccaactcaactttgt |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3484063 |
atatttctaaatcccaaaaaaacaaagtcaagagtagcatctatcgtatattccctttgaatctcctctaaaatttccaatgcatccaactcaactttgt |
3483964 |
T |
|
| Q |
102 |
ttttcgataaataagaatattgctttaataatagtccattttacaaccaaatatttatgatgatacaatacattatttaagctactttgtcaaatttctc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483963 |
ttttcgataaataagaatattgctttaataatagtccattttacaaccaaatatttatgatgatacaatacattatttaagctactttgtcaaatttctc |
3483864 |
T |
|
| Q |
202 |
taatggagnnnnnnnnnnnnnnnnnnncatgctcatctttaatgaaactcacttaaatagactttcattggagaagctcctagtgaatttcaagacacgc |
301 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483863 |
taatggagaaaaaaaattaaaaaa---catgctcatctttaatgaaactcacttaaatagactttcattggagaagctcctagtgaatttcaagacacgc |
3483767 |
T |
|
| Q |
302 |
catgacaaatctcttaagtggatacacaccaaatctcttaagtgaatgttaccttgaatcacactcttactagttatgaaaatactaagtgacttctcaa |
401 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483766 |
caggacaaatctcttaagtggatacac--caaatctcttaagtgaatgttaccttgaatcacactcttactagttatgaaaatactaagtgacttctcaa |
3483669 |
T |
|
| Q |
402 |
cgtatttaggctttgcttgttcatcatgagttcatgacactaaaaatttccacacccaactcttagaactcaatgtt--------ttccctcataggctc |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3483668 |
cgtatttaggctttgcttgttcatcatgagttcatgacactaaaaatttccacacccaactcttagaactcaatgttttccacttttccctcataggctc |
3483569 |
T |
|
| Q |
494 |
acccattgtttctcaatcttttcaactcaatagtattttctgcccaatatagctcatcttagtctttatgatgataaatctttactatggttagtaagaa |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483568 |
acccattgtttctcaatcttttcaactcaatagtattttctgcccaatatagctcatcttagtctttatgatgataaatctttactatggttagtaagaa |
3483469 |
T |
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