View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_33 (Length: 325)
Name: NF17081_low_33
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 23597666 - 23597966
Alignment:
| Q |
9 |
gaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggag |
108 |
Q |
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| T |
23597666 |
gaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggag |
23597765 |
T |
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| Q |
109 |
ggtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtg |
208 |
Q |
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| T |
23597766 |
ggtatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtg |
23597865 |
T |
|
| Q |
209 |
gtgctggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcc |
308 |
Q |
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| T |
23597866 |
gtgctggccccaaaattgaggaagttgattaagcggaacttttgtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcc |
23597965 |
T |
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| Q |
309 |
t |
309 |
Q |
| |
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| |
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| T |
23597966 |
t |
23597966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 23588814 - 23589087
Alignment:
| Q |
9 |
gaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggag |
108 |
Q |
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| T |
23588814 |
gaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggag |
23588913 |
T |
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| Q |
109 |
ggtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtg |
208 |
Q |
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| T |
23588914 |
ggcatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcg |
23589013 |
T |
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| Q |
209 |
gtgctggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggatttt |
282 |
Q |
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| T |
23589014 |
gtgctggccccaaaattgaggaagttgattaagctaaactttgttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
64 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
148 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 8101747 - 8101615
Alignment:
| Q |
16 |
attgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtattt |
115 |
Q |
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| T |
8101747 |
attgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatct |
8101648 |
T |
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| Q |
116 |
gcaaccctatcattgcaaggatgtatcaaggtg |
148 |
Q |
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| T |
8101647 |
gtaacccaatcattgcaaagatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
69 |
agaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
148 |
Q |
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|||||||||||| ||||| || ||||||||||| || ||| | |||||||||| |||||||| | |||||||||||||| |
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| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
58 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
148 |
Q |
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| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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