View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17081_low_34 (Length: 318)
Name: NF17081_low_34
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 10200759 - 10201072
Alignment:
| Q |
1 |
cctcaacaaggaagtataatctatgatcaacatcaaacacactattttataattcaaatgacagaaaaactaagccgcaaagtgtcttatttaattattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10200759 |
cctcaacaaggaagtataatctatgatcaacatcaaacacactattttataattcaaatgacataaaaactaagccgcaaagtgtcttatttaattattt |
10200858 |
T |
|
| Q |
101 |
caagtgacagaaactaaacattataaataaacttgcaacttgaaagttaaaactataataacataacatattagaattactataaatcataagtataaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10200859 |
caagtgacagaaactaaacattataaataaacttgcaacttgaaagttaaaactataataacataacatattagaattactataaatcataagtataaga |
10200958 |
T |
|
| Q |
201 |
gagtgataccggagaatcaagtccgaaggtgaatgaaaatgacttggaaagctgtgcactgataacaaacttgacatgcctccttagtatccttcttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10200959 |
gagtgataccggagaatcaagtccgaaggtgaatgaaaatgacttggaaagctgtgcactgataacaaacttgacatgcctccttagtatccttcttcct |
10201058 |
T |
|
| Q |
301 |
ttcctttgctactc |
314 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
10201059 |
ttcctttgatactc |
10201072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University