View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_35 (Length: 314)
Name: NF17081_low_35
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 54981301 - 54981019
Alignment:
| Q |
14 |
aagaatattcaacgttattgagaaattagtggtttatacctgaaatcattgagtttttgtggccaaagttttaaattcctttcatcttcaggatgtacct |
113 |
Q |
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| T |
54981301 |
aagaatattcaacgttattgagaaattagtggtttatacctgaaatcattgagtttttgtggccaaagttttaaattcctttcatcttcaggatgtacct |
54981202 |
T |
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| Q |
114 |
tcagatatactctatcagcccaatcattccttttaagatctgaataattatcatttccatatccttcagtatcagtagtgcctagccccctagcacattt |
213 |
Q |
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| T |
54981201 |
tcagatatactctatcagcccaatcattccttttaagatctgaataattatcatttccatatccttcagtatcagtagtgcctagccccctagcacattt |
54981102 |
T |
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| Q |
214 |
ttgcttttcttcctttggaagttcaaagaattgccttgaaacttccctcactttgtcaagaaacaagctcgtcataccatggt |
296 |
Q |
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| T |
54981101 |
ttgcttttcttcctttggaagttcaaagaattgccttgaaacttccctcactttgtcaagaaacaagctcgtcataccatggt |
54981019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 54962188 - 54961941
Alignment:
| Q |
46 |
tttatacctgaaatcattgagtttttgtggccaaagttttaaattcctttcatcttcaggatgtaccttcagatatactctatcagcccaatcattcctt |
145 |
Q |
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| T |
54962188 |
tttatacctgaaatcattgggtttttggggaaaaagtttgaaattcctctgatgttccggatgtaccttaagatatactctgtcagtccaatcaagcttt |
54962089 |
T |
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| Q |
146 |
ttaagatctgaata-atta--tcatttccatatccttcagtatcagtagtgcctagccccctagcacatttttgcttttcttcctttggaagttcaaaga |
242 |
Q |
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| T |
54962088 |
tggttttctgataatattacatcatttccatatccttcaataccgtttg------gctccctagcatatttttgcttttcttcctttgaaagttcaaaga |
54961995 |
T |
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| Q |
243 |
attgccttgaaacttccctcactttgtcaagaaacaagctcgtcataccatggt |
296 |
Q |
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| T |
54961994 |
attgctttgaaatttccctcactttgttaagagtcaagcttgtcatgccatggt |
54961941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 54965076 - 54965003
Alignment:
| Q |
201 |
ccctagcacatttttgcttttcttcctttggaagttcaaagaattgccttgaaacttccctcactttgtcaaga |
274 |
Q |
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| T |
54965076 |
cccttgcatatttttgcttttcttcctttggaagttcaaagaattgctatgaaacttccctcacattgttaaga |
54965003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 31322188 - 31322435
Alignment:
| Q |
46 |
tttatacctgaaatcattgagtttttgtggccaaagttttaaattcctttcatcttcaggatgtaccttcagatatactctatcagcccaatcattcctt |
145 |
Q |
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| T |
31322188 |
tttatacctgaaatcaatggggttttggggccaaagtttgaaattcctttgatcttcaggatgtaccttcaaaaataatctgtcacaccaatcaagcatt |
31322287 |
T |
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| Q |
146 |
ttaagatctgaata-att--atcatttccatatccttcagtatcagtagtgcctagccccctagcacatttttgcttttcttcctttggaagttcaaaga |
242 |
Q |
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| | |||||||| ||| ||||||||||||||||||| ||| || | || |||| || ||||||||||||||||||||||||||||||| | |
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| T |
31322288 |
tgattttctgaatatattgtatcatttccatatccttcaatat------tgatttgctccctttcatatttttgcttttcttcctttggaagttcaaaaa |
31322381 |
T |
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| Q |
243 |
attgccttgaaacttccctcactttgtcaagaaacaagctcgtcataccatggt |
296 |
Q |
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| T |
31322382 |
attgctttgaaacttcactcactttgtcaagaaacgagcttgtcatcccatggt |
31322435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 31330626 - 31330873
Alignment:
| Q |
46 |
tttatacctgaaatcattgagtttttgtggccaaagttttaaattcctttcatcttcaggatgtaccttcagatatactctatcagcccaatcattcctt |
145 |
Q |
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| T |
31330626 |
tttatacctgaaatcaatgggatttaggggccaaaatttgaaattcctttgatcttcaggatgtaccttcaaaaataatctgtcacaccaatcaagcctt |
31330725 |
T |
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| Q |
146 |
ttaagatctgaata-att--atcatttccatatccttcagtatcagtagtgcctagccccctagcacatttttgcttttcttcctttggaagttcaaaga |
242 |
Q |
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| T |
31330726 |
tgattttctgaatatattgtatcattaccatatccttcaacat------tgtttggttcccttgcatatttttgcttttcttcctttggaagttcaaaaa |
31330819 |
T |
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| Q |
243 |
attgccttgaaacttccctcactttgtcaagaaacaagctcgtcataccatggt |
296 |
Q |
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||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||| |
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| T |
31330820 |
attgctttgaaacttccctcactttgtcaagaaacgagcttgtcatcccatggt |
31330873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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