View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_36 (Length: 313)
Name: NF17081_low_36
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 44158393 - 44158107
Alignment:
| Q |
14 |
agaatattaaatgatcaatgtcagcatgctttacttgtccaccaaagcagtgttttacaatttcaacatccgtctcaatgatcaaattgtgaaattcttg |
113 |
Q |
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| T |
44158393 |
agaatattaaatgatcaatgtcagcatgcttcacttgtccaccaaagcagtgttttacaatttcaacatccgtctcaatgatcaaattgtgaaatttttg |
44158294 |
T |
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| Q |
114 |
ttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcg-----tttccttccttgtagctgcaaaaggtc |
208 |
Q |
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| T |
44158293 |
ttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcgtttcgtttccttccttgtagccgcaaaaggtc |
44158194 |
T |
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| Q |
209 |
acaggacctacaaaattgcgcacacaaaaccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgta |
295 |
Q |
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| T |
44158193 |
acaggacctacaaagttgcgcacacaaaaccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgta |
44158107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 295
Target Start/End: Original strand, 44145121 - 44145328
Alignment:
| Q |
88 |
tcaatgatcaaattgtgaaattcttgttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcgtttcct |
187 |
Q |
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| T |
44145121 |
tcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaacaccatatcaaggctagggattcaaccatcagaggagatagtgtaatatcttcct |
44145220 |
T |
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| Q |
188 |
tccttgtagctgcaaaaggtcacaggacctacaaaattgcgcac-acaaaaccataaccagtacaatattcaaaacaatcagcatcagcattagttttca |
286 |
Q |
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| T |
44145221 |
tccttgtagctgcgaa-ggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttca |
44145319 |
T |
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| Q |
287 |
gcctatgta |
295 |
Q |
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|||| |||| |
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| T |
44145320 |
gcctctgta |
44145328 |
T |
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