View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17081_low_4 (Length: 572)
Name: NF17081_low_4
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_4 |
 | |
|
| [»] scaffold1064 (2 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 229 - 552
Target Start/End: Complemental strand, 9238624 - 9238299
Alignment:
| Q |
229 |
atgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctct-aacactgagaattgacaacaagtcagccataagcct |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
9238624 |
atgtcaagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagtcagccataagtct |
9238525 |
T |
|
| Q |
328 |
tgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtat |
427 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9238524 |
tgtcaagaatcccatctctcatggtagaagcaaacatattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtat |
9238425 |
T |
|
| Q |
428 |
tgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagc |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238424 |
tgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagc |
9238325 |
T |
|
| Q |
527 |
agttataaattaagggggagtattag |
552 |
Q |
| |
|
|||||| |||||||||| |||||||| |
|
|
| T |
9238324 |
agttatgaattaaggggaagtattag |
9238299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 170 - 553
Target Start/End: Original strand, 26904888 - 26905267
Alignment:
| Q |
170 |
caacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagctta |
269 |
Q |
| |
|
|||||||||| ||| || ||||| ||| || |||||| |||||| ||| ||||| |||||||||||| | ||||||||||||| ||||||||| | | |
|
|
| T |
26904888 |
caacctgttagtgcactttcatcctgtgaagttgagtaaattgcaagtatatttgatacatgtcaagccat-tggttggattcagtgatgaaagagatca |
26904986 |
T |
|
| Q |
270 |
agtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattga |
369 |
Q |
| |
|
|||| ||| |||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||| ||||||||| ||||| |
|
|
| T |
26904987 |
agtgcgaa----tgaaacctctaacactgaagattgacaacaaatcagccataagtcttgctaagaaccctatttctcatggtataagcaaacacattga |
26905082 |
T |
|
| Q |
370 |
gactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagact |
468 |
Q |
| |
|
||||||||| | |||||| || |||| ||| ||||| ||||||||| | || |||||||||| | || ||||||||||| ||||||||| ||| || |
|
|
| T |
26905083 |
gactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctttacaaaggct |
26905182 |
T |
|
| Q |
469 |
ttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagt |
553 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||| |||||||||||||| || ||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
26905183 |
ttgaagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaatggggagtattagt |
26905267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 202 - 500
Target Start/End: Original strand, 5706756 - 5707055
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
5706756 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
5706855 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtga |
401 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || ||||||||| |
|
|
| T |
5706856 |
attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtga |
5706955 |
T |
|
| Q |
402 |
ctaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| |
|
|
| T |
5706956 |
ctaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaa |
5707055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 202 - 513
Target Start/End: Original strand, 9880874 - 9881190
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||| |||| ||| |||||| |||| |||||| |||||||||| ||||||| |||||||||||||| |||||| | ||||||||||||| || | | |
|
|
| T |
9880874 |
tgagtatattgtaggaacattttctacttgtcaaactttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaaccctcata |
9880973 |
T |
|
| Q |
302 |
attgacaac-aagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagact-agattgcgtttcatttggaagcaagt |
399 |
Q |
| |
|
||||||||| || || ||||||| ||||| |||||||||||||| |||||||||||||| || || |||||| | ||| | ||| ||| || |||| | |
|
|
| T |
9880974 |
attgacaacaaaatctaccataagtcttgctaagaatcccatctcacatggtagaagcaagcacatagagactaaaattccattttattagggagcagat |
9881073 |
T |
|
| Q |
400 |
gactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagac-tttgaagcttgac-atatttgaatttttga |
496 |
Q |
| |
|
||||||||| |||| |||| |||| |||||||| || | ||||| ||||||||||| ||||| ||| | | || |||||| | |||||||||||||| |
|
|
| T |
9881074 |
gactaatggaatgaatgaggtgcaatattgtcccactgagttgcaacttgcagatggttttactaaggcagtaaaaacttgacaaaatttgaatttttga |
9881173 |
T |
|
| Q |
497 |
ggaaaaaacttggtgtt |
513 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
9881174 |
ggaagaaacttggtgtt |
9881190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 9238848 - 9238771
Alignment:
| Q |
154 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9238848 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtgaatctgagtacattgcaggtacatttgctacatg |
9238771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 185 - 552
Target Start/End: Complemental strand, 38099723 - 38099355
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
284 |
Q |
| |
|
||||||| |||| || |||||||||||||||| ||||||| | |||||||||| ||| | |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38099723 |
ctctcattatgtgaagttgagtacattgcaggtgcatttgcaatatgtcaagctctgttgctggattcaatgatgaaagagctcaagtgtgaagtgatga |
38099624 |
T |
|
| Q |
285 |
agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgttt |
384 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||| ||||||| ||||| | |||||| || ||||||||||||| |||||| |||||||||||||| | ||| |
|
|
| T |
38099623 |
aacctctaacactgaagattgacaacaaatcaaccataagtcttgctaggaatcctatttctcatggtagaatcaaacacattgagactagattccattt |
38099524 |
T |
|
| Q |
385 |
catttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacata |
483 |
Q |
| |
|
|||| || ||| ||||||||||||||||||||| | || |||||||||||| ||||| |||| ||| |||||||||| ||| |||||||||||| |||| |
|
|
| T |
38099523 |
cattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggctttacaaaggctttgaagcttggcata |
38099424 |
T |
|
| Q |
484 |
tttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattag |
552 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
38099423 |
tttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgttag |
38099355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 203 - 550
Target Start/End: Original strand, 301926 - 302273
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
301926 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
302025 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| ||||||| ||||| ||||| || || ||||| |||||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
302026 |
ttgacaacaaatcagccacaagtcttgcaaagaatctaatctcacatggcaggagtaaacacattgagaccagattcaatttcatttgagagcaggtgac |
302125 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
501 |
Q |
| |
|
|||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
302126 |
taatggaatgattgagctgcactactgccccacaaaactacaacttgctgatggttttacaaaagcaatgaagcttgacagatttgaattcttgaggaag |
302225 |
T |
|
| Q |
502 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
550 |
Q |
| |
|
||| | |||||| | || ||||| ||||||| |||||||||||||||| |
|
|
| T |
302226 |
aaattaggtgtttttaatattcaacagttat-gattaagggggagtatt |
302273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 185 - 513
Target Start/End: Original strand, 3461355 - 3461684
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
284 |
Q |
| |
|
|||||||||||| || |||||||| | ||||| |||||||| |||||||| | ||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
3461355 |
ctctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaagcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatga |
3461454 |
T |
|
| Q |
285 |
agcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgttt |
384 |
Q |
| |
|
||||||||||||||| |||||| || || ||||||||||| |||| |||||||| |||| ||||| || || ||||| |||||||| | ||| | ||| |
|
|
| T |
3461455 |
agcctctaacactgaaaattgataataaatcagccataagtcttgtaaagaatccaatcttacatggcaggagtaaacacattgagaccatattccattt |
3461554 |
T |
|
| Q |
385 |
catttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacata |
483 |
Q |
| |
|
||| | |||| ||||||||||| ||||||||| |||| ||||| || ||| || |||| ||||| ||||| ||||||| | | | |||||||||||| |
|
|
| T |
3461555 |
tattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttgacata |
3461654 |
T |
|
| Q |
484 |
tttgaatttttgaggaaaaaacttggtgtt |
513 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |
|
|
| T |
3461655 |
tttgaattcttgagaaaggaacttggtgtt |
3461684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 552
Target Start/End: Complemental strand, 39190997 - 39190844
Alignment:
| Q |
399 |
tgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgag |
497 |
Q |
| |
|
|||||||||| ||||||||| |||| || || || ||| || |||| ||||| ||||| ||| ||| | | |||||||||||| ||||||||| ||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag |
39190898 |
T |
|
| Q |
498 |
gaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattag |
552 |
Q |
| |
|
||| ||| | |||||| | || || |||||||||| |||||||||||||||||| |
|
|
| T |
39190897 |
gaagaaattaggtgtttttaatatgcagcagttat-gattaagggggagtattag |
39190844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 202 - 364
Target Start/End: Complemental strand, 2578 - 2416
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2578 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgaga |
2479 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2478 |
attgacaacaagtcagccataagccttgtcaagaatcccatctctcatggtagaagcaaacat |
2416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 410 - 552
Target Start/End: Complemental strand, 2417 - 2274
Alignment:
| Q |
410 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacatatttgaatttttgaggaaaaaacttg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2417 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttg |
2318 |
T |
|
| Q |
509 |
gtgttgtgaacattcagcagttataaattaagggggagtattag |
552 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2317 |
gtgttgtgaacattaagcagttatgaattaagggggagtattag |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 203 - 550
Target Start/End: Complemental strand, 37787169 - 37786822
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
37787169 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
37787070 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| |||||||| | ||| | ||||||| | |||||||||| |
|
|
| T |
37787069 |
ttgacaacaaatcagccataagtcttgcaaagaatccaatctcacatggcagaagtaaacacattgagaccatattccatttcattagagagcaagtgac |
37786970 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
501 |
Q |
| |
|
|||||| ||||||||| |||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
37786969 |
taatggaatgattgagctgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaattcttgaggaat |
37786870 |
T |
|
| Q |
502 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
550 |
Q |
| |
|
||| | |||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
37786869 |
aaattaggtgtttttaatattcagcagttat-gattaagggggagtatt |
37786822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 332 - 552
Target Start/End: Original strand, 6414319 - 6414541
Alignment:
| Q |
332 |
aagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtc |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| ||||||| || |||| ||||||||||| ||||||||||||| || |||| |
|
|
| T |
6414319 |
aagaatcccatctctcatggcggaagcaaacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtc |
6414418 |
T |
|
| Q |
432 |
ctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtt |
530 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||| ||||||||||||| | |||| || |||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
6414419 |
ctacagaattgcagcttgcagatggttttacaaaggctttgaagcttgatagatttaaacttttgaggaagaaacttgttgttgttaacattcagcagtt |
6414518 |
T |
|
| Q |
531 |
ataaattaa-gggggagtattag |
552 |
Q |
| |
|
|| |||||| ||||||||||||| |
|
|
| T |
6414519 |
attaattaaggggggagtattag |
6414541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 209 - 513
Target Start/End: Original strand, 14233709 - 14234014
Alignment:
| Q |
209 |
attgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgaca |
308 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||| |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
14233709 |
attgcaagaacatttgctacttgtcaagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgaca |
14233808 |
T |
|
| Q |
309 |
acaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatgg |
408 |
Q |
| |
|
|||| || ||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| ||||| | ||||||| || |||| ||||||||||| |
|
|
| T |
14233809 |
acaaatcttccataagccttgctaagaatcctatctcacatggtagaagcaagcacattgagaccagattccatttcattagggagcaggtgactaatgg |
14233908 |
T |
|
| Q |
409 |
tatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaactt |
507 |
Q |
| |
|
||||||||| |||| |||||||| || | |||| ||||||||||| ||||| ||| | | || ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
14233909 |
aatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggttttactaaggcagtaaaacttgacagatttgaattttttaggaagaaactt |
14234008 |
T |
|
| Q |
508 |
ggtgtt |
513 |
Q |
| |
|
|||||| |
|
|
| T |
14234009 |
ggtgtt |
14234014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
| Q |
484 |
tttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagt |
547 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
31000575 |
tttgaatttttgaggaagaaacttgatgtttttaacattcagcagttatgaattaagggggagt |
31000638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 201 - 552
Target Start/End: Original strand, 296659 - 297011
Alignment:
| Q |
201 |
ctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgag |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||| | ||| ||||||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
296659 |
ctgagtacattgcaggaacatttgctacttttcaagcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaa |
296758 |
T |
|
| Q |
301 |
aattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtg |
400 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| |||||||||| | ||| ||||| |||||||| ||||| | ||||||| || |||| ||| |
|
|
| T |
296759 |
gattgacaacaaatcagccataagtcttgctaagaatcccgtctctcatggcaaaagtaaacacattgagaccagattccatttcattagggagcaggtg |
296858 |
T |
|
| Q |
401 |
actaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgagga |
499 |
Q |
| |
|
|||||||| ||||| |||||||| || || || ||| || | || |||| ||||| ||||||| | | ||||||||||| ||||||||| ||||||| |
|
|
| T |
296859 |
actaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaaaagcagcgaagcttgacacatttgaattcttgagga |
296958 |
T |
|
| Q |
500 |
aaaaacttggtg-ttgtgaacattcagcagttataaattaagggggagtattag |
552 |
Q |
| |
|
| ||| | |||| || | || ||||||||||||| |||||||||||||||||| |
|
|
| T |
296959 |
agaaattaggtgttttttaatattcagcagttat-gattaagggggagtattag |
297011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 189 - 513
Target Start/End: Original strand, 30380226 - 30380550
Alignment:
| Q |
189 |
catcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcc |
288 |
Q |
| |
|
|||||||| || ||| ||||||| ||| || |||||||| ||||||||| | || |||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
30380226 |
catcatgtgaagttgaatacattgaaggaacttttgctacttgtcaagctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacc |
30380325 |
T |
|
| Q |
289 |
tctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatt |
388 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| | ||| ||||| |||||||| ||||| | ||||||| |
|
|
| T |
30380326 |
tctaacactggagattgacaacaaatcagccataagtcttgcttagaatccaatctcacatggcaaaagtaaacacattgagaccagattccatttcatt |
30380425 |
T |
|
| Q |
389 |
tggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttg |
487 |
Q |
| |
|
| |||| ||||||||||| ||||||||| | || || | | | ||| || |||| |||||| |||| ||||||| | | ||||||||||||||||| |
|
|
| T |
30380426 |
agagagcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatgg-tttacaaaagcagtgaagcttgacatatttt |
30380524 |
T |
|
| Q |
488 |
aatttttgaggaaaaaacttggtgtt |
513 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30380525 |
aatttttgaggaaaaaacttggtgtt |
30380550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 513
Target Start/End: Original strand, 35898321 - 35898508
Alignment:
| Q |
327 |
ttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagta |
426 |
Q |
| |
|
|||| |||||||| || || ||||| || || ||||| |||||||| ||||| | ||||||| | |||| ||||||||||| ||||||||| |||| || |
|
|
| T |
35898321 |
ttgcaaagaatccaatatcacatggcaggagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctgcacta |
35898420 |
T |
|
| Q |
427 |
ttgtcctacataattgcagcttgcagatggcttt-acaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
513 |
Q |
| |
|
||| | || || |||| ||||| |||||||| | ||| | ||||| |||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
35898421 |
ttgctccacggaactgcaacttgcttatggctttaaaaaggcagtgaagtttgacagatttgaattcttgaggaaggaacttggtgtt |
35898508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 202 - 500
Target Start/End: Complemental strand, 18641517 - 18641218
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
18641517 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
18641418 |
T |
|
| Q |
302 |
attgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtga |
401 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || ||||||||| |
|
|
| T |
18641417 |
attgacaacaaatcatccataagtcttgctaagagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtga |
18641318 |
T |
|
| Q |
402 |
ctaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaa |
500 |
Q |
| |
|
||||||| ||||||||| |||| || || || ||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| |
|
|
| T |
18641317 |
ctaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaa |
18641218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 34982935 - 34983048
Alignment:
| Q |
202 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
301 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
34982935 |
tgagtatattgcatgaacatttgctacttgtcaagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatg |
34983034 |
T |
|
| Q |
302 |
attgacaacaagtc |
315 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
34983035 |
attgacaataagtc |
34983048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 277 - 513
Target Start/End: Complemental strand, 50778598 - 50778361
Alignment:
| Q |
277 |
agtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactaga |
376 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || ||||||||||| ||||| |||||||| ||||| ||||| || || ||||| |||||||| ||| |
|
|
| T |
50778598 |
agtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgcaaagaatccaatctcacatggcaggagtaaacacattgagaccaga |
50778499 |
T |
|
| Q |
377 |
ttgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagc |
475 |
Q |
| |
|
|| | ||||||| | |||| ||||||||| | ||||||||| |||| ||||| || ||| || |||| ||||| ||||||||||||| | | | |||| |
|
|
| T |
50778498 |
ttccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaaagc |
50778399 |
T |
|
| Q |
476 |
ttgacatatttgaatttttgaggaaaaaacttggtgtt |
513 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
50778398 |
ttgacagatttgaattttttaggaaggaacttggtgtt |
50778361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 44536499 - 44536443
Alignment:
| Q |
181 |
tgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagc |
237 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
44536499 |
tgcgctctcatccagtaaaccagagtacattgcagaaacatttgctacttgtcaagc |
44536443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 203 - 550
Target Start/End: Original strand, 48910 - 49257
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
48910 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
49009 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||| ||||| | ||||||| | |||| ||||| |
|
|
| T |
49010 |
ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgac |
49109 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
501 |
Q |
| |
|
|||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
49110 |
taatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaag |
49209 |
T |
|
| Q |
502 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
550 |
Q |
| |
|
||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
49210 |
aaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
49257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 203 - 550
Target Start/End: Original strand, 28248748 - 28249095
Alignment:
| Q |
203 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
302 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
28248748 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
28248847 |
T |
|
| Q |
303 |
ttgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgac |
402 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||| ||||| | ||||||| | |||| ||||| |
|
|
| T |
28248848 |
ttgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaagtaaacacatttcgaccagattccatttcattagagagcatgtgac |
28248947 |
T |
|
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
501 |
Q |
| |
|
|||||| |||||||||||||| || || || ||| || | || ||||| ||||| ||||||| | | |||||||||||| ||||||||| |||||||| |
|
|
| T |
28248948 |
taatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaag |
28249047 |
T |
|
| Q |
502 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
550 |
Q |
| |
|
||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
28249048 |
aaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
28249095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 29011291 - 29011197
Alignment:
| Q |
185 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagt |
279 |
Q |
| |
|
|||||||| ||| || ||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
29011291 |
ctctcatcttgtgaagctgagtatattgcaggaatatttgctacatgtcaagctttgtggttggattcagtgatgaatgaactcaagtgtgaagt |
29011197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 551
Target Start/End: Complemental strand, 29011122 - 29010973
Alignment:
| Q |
403 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
501 |
Q |
| |
|
|||||| ||| ||||| |||||| |||||||||| || |||| |||||| |||| ||||| | | ||||||| ||||||| |||| | ||||| ||||| |
|
|
| T |
29011122 |
taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttactaaagctttgaaacttgacaaatttaagttttttaggaag |
29011023 |
T |
|
| Q |
502 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatta |
551 |
Q |
| |
|
|||||||||||| | | ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
29011022 |
aaacttggtgttttcagtattcaacagttatgaattaagatggagtatta |
29010973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 552
Target Start/End: Complemental strand, 11187090 - 11186982
Alignment:
| Q |
444 |
agcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaaggg |
542 |
Q |
| |
|
||||||||||||| ||||||| | | |||| ||| || ||||||||||||||||||| ||||| ||| || | | |||||||||||| |||||||| |
|
|
| T |
11187090 |
agcttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttat-gattaaggg |
11186992 |
T |
|
| Q |
543 |
ggagtattag |
552 |
Q |
| |
|
|||||||||| |
|
|
| T |
11186991 |
ggagtattag |
11186982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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