View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_40 (Length: 299)
Name: NF17081_low_40
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 4785614 - 4785353
Alignment:
| Q |
11 |
cagagacaatgaggatgttgaagattaaaggtctgtgctatatttgtgctacatagaataagaaaacatactattgagaaagnnnnnnnnnntcatattt |
110 |
Q |
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| T |
4785614 |
cagagacaatgaggatgttgtagattaaaggtctgtgctatatttgtgctacatagaataagaaaacatactattgagaaagaaaaaaaa--tcatattt |
4785517 |
T |
|
| Q |
111 |
tgtgtgaccgtgttaacaaggagaagctgcatatggtgcattgcaagacaaaggttcaaatggcaaatgtgctgactaaaccaaaccattgagtaagggc |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4785516 |
tgtgtgaccgtgttaacaaggagaagctgcat---------tgcaagacaaaggttcaaatggcaaatgtgctgactaaaccaaaccattgagtaagggc |
4785426 |
T |
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| Q |
211 |
aggtttgaagggctcaattaaagaaatgcttggagtggagtcactagccaaagtcaatcaaggaggtgtgtat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4785425 |
aggtttgaagggctcaattaaagaaatgcttggagtggagtcactagccaaagtcaatcaaggaggtgtgtat |
4785353 |
T |
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