View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_47 (Length: 262)
Name: NF17081_low_47
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 38147150 - 38147365
Alignment:
| Q |
9 |
attattctggtgattgaactgagtgagttattctcctcattcctccaatgacctcctacataatgcttcttcaatgttaaagtcatgccactaagctact |
108 |
Q |
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| T |
38147150 |
attattctggtgattgagctgagtgagttattctcctcattcctccaatgacctcctacataatgcttcttcaatgttaaagtcataccactaagctact |
38147249 |
T |
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| Q |
109 |
acttcatgatcctaaactaattttgtctttgaagatctatcattatacttccttaattataaaatgagtgttatttaaggttgttacgtacggattaaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
38147250 |
acttcatgatcctaaactaattttgtctttgaagatctatcattatacctccttaattataaaatgagtg--------------tacgtacggattaaga |
38147335 |
T |
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| Q |
209 |
aatataataaaacattaaaatatttaataa |
238 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38147336 |
aatataataaaacattaaaatatttaataa |
38147365 |
T |
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