View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_48 (Length: 255)
Name: NF17081_low_48
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 6128638 - 6128406
Alignment:
| Q |
13 |
attcttgcaagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcattaatgattccctgcaattaat----agta |
108 |
Q |
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| T |
6128638 |
attcttgcaagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcattaatgattccctgcaattaattaatagta |
6128539 |
T |
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| Q |
109 |
gtcatataatgaaacatttatagagcatttaaatttctagcaagaaaagagtatttgcacttgttcattgatttgctttgattaatttgacactttgtgg |
208 |
Q |
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| T |
6128538 |
gtcatataatgaaacatttatagagcatttaaatttctagcaagaaaagagtatttgcacttgttcattgatttgctttgattaatttgacactttgtgg |
6128439 |
T |
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| Q |
209 |
gctttgtaagaaatgcaaaataggtgttaaagg |
241 |
Q |
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| T |
6128438 |
gctctgtaagaaatgcaaaataggtgttaaagg |
6128406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 34487974 - 34488052
Alignment:
| Q |
24 |
atagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcattaatgattccctgcaattaata |
105 |
Q |
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| T |
34487974 |
atagaaacatcttcttcacttcatctttttccatttctacttgttgcttcatattgccat---tgatttcctgcaattaata |
34488052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 34461950 - 34462012
Alignment:
| Q |
21 |
aagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcat |
83 |
Q |
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| T |
34461950 |
aagatagtaaaagtttcttcacttcctctttttgcatttgtacttgttgcatcatattgtcat |
34462012 |
T |
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