View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_5 (Length: 549)
Name: NF17081_low_5
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 5 - 532
Target Start/End: Original strand, 43010156 - 43010679
Alignment:
| Q |
5 |
caagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagccgttaagttcaataaacttatgaatgaaggaagtactgttcttga |
104 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |
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| T |
43010156 |
caagaatatcaatcttgaaataacattaaagtgcacttgttaagtaataaagagtcattaagttcaataaacttatgaatgaag----tactgttcttga |
43010251 |
T |
|
| Q |
105 |
aaattatttggtatgatatttgagggttaaagtacacaatataaacctttatacagagctgaaaactggatgaagcatcaaaagtagttatattcgtggc |
204 |
Q |
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| T |
43010252 |
aaattatttggtatgatatttgagggttaaagtacacaatataaacctttatacagagctgaaaactggatgaagcatcaaaagtagttatattcgtggc |
43010351 |
T |
|
| Q |
205 |
cgaggcatgagagtcattaggtgtaacgatttggtttggttcacagtcataaaatggtcaaagtgatcaaatttatatcaattcagtttggttttcaata |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43010352 |
cgaggcatgagggtcattaggtgtaacgatttggtttggttcacagtcataaaatgttcaaagtgatcaaatttatatcaattcggtttggttttcaata |
43010451 |
T |
|
| Q |
305 |
tttttcagaaaattgaactaaactaaaatgagaatatacgcaattcaattcctatttgagcacacacattatatatgcaattgaaaatattatcttcact |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43010452 |
tttttcagaaaattgaactaaactaaaatgagaatatacgcaattcaattcttatttgagcacacacattatatatgcaattgaaaatattatcttcact |
43010551 |
T |
|
| Q |
405 |
acattataaactttagcagcttctacctagttacgagnnnnnnntcctacctgattgcacaaattttgcacctttctaaaatctccacttggaggatgtt |
504 |
Q |
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| T |
43010552 |
acattataaactttagcagcttctacctagttacgagaaaaaaatcctacctgattgcacaaattttgcacctttctaaaatctccacttggaggatgtt |
43010651 |
T |
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| Q |
505 |
agaacattacaccaatggacagcagctg |
532 |
Q |
| |
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| T |
43010652 |
agaacattacaacaatggacagcagctg |
43010679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 18217802 - 18218104
Alignment:
| Q |
5 |
caagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagccgttaagttcaataaacttatgaatgaaggaagtactgttcttga |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
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| T |
18217802 |
caagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagttgttaagttcaataaatctatgaat----gaagtactgttcttga |
18217897 |
T |
|
| Q |
105 |
aaattatttggtatgatatttgagggttaaagtacacaat----ataaaccttt--atacagagctgaaaactggatgaagcatcaaaagtagttatatt |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| || |
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| T |
18217898 |
aaattatttggtatgatgtttgagggttaaagtacacaatataaataaaccttttagaacagagttgaaaactggatgaagcatcaaaagtagttatgtt |
18217997 |
T |
|
| Q |
199 |
cgtggccgaggcatgagag--tcattaggtgtaacgatttggtttggttcacagtcataaaatggtcaaagtgatcaaatttatatcaattcagtttggt |
296 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||||||||| || |||| ||| || ||||| ||||||||||||||| || ||| || || |
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| T |
18217998 |
cgtggccaaggcatgagagtatcattaagtgtaacgatttggtttggtttacggtcaaaaattgttcaaaccgatcaaatttatatcgatccagattagt |
18218097 |
T |
|
| Q |
297 |
tttcaat |
303 |
Q |
| |
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||||||| |
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| T |
18218098 |
tttcaat |
18218104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 386 - 532
Target Start/End: Original strand, 18218362 - 18218509
Alignment:
| Q |
386 |
tgaaaatattatcttcactac-attataaactttagcagcttctacctagttacgagnnnnnnntcctacctgattgcacaaattttgcacctttctaaa |
484 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| | |
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| T |
18218362 |
tgaaaatattatcttcactactattataaacttcagcagcttctacctagttacgagaaaaaaatcctgcctgactgcacaaattttgcacctttctaga |
18218461 |
T |
|
| Q |
485 |
atctccacttggaggatgttagaacattacaccaatggacagcagctg |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18218462 |
atctccacttggaggatgttagaacattacaccaatggacagcagctg |
18218509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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