View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_55 (Length: 218)
Name: NF17081_low_55
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 34865401 - 34865584
Alignment:
| Q |
22 |
aaaaggagggggaagaatagagcgcaataaagcacagacactacggaatcgaagaacatcaaatggattcaaattcatggatataataactaaccataat |
121 |
Q |
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| T |
34865401 |
aaaaggagggggaagaatagagcgcaataaagcacagacactacggaatcgaagaacatcaaatggattcaaattcttggatataataactaaccataat |
34865500 |
T |
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| Q |
122 |
tctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagtctctgct |
205 |
Q |
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| T |
34865501 |
tctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagtccctgct |
34865584 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 51858077 - 51857986
Alignment:
| Q |
99 |
tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccg |
190 |
Q |
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| T |
51858077 |
tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg |
51857986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 51858139 - 51858087
Alignment:
| Q |
22 |
aaaaggagggggaagaatagagcgcaataaagcacagacactacggaatcgaa |
74 |
Q |
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| T |
51858139 |
aaaaggaggggaaagaatagagcgccataaagcacaggcactacggaatcgaa |
51858087 |
T |
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