View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_56 (Length: 212)
Name: NF17081_low_56
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 37998557 - 37998768
Alignment:
| Q |
1 |
gtaaaacatattcttaaacacaatcatagaaattgaagatagtcctctcnnnnnnnnnnnnnnnnnnnttgaagatagtaacttgttgaattaaacaata |
100 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37998557 |
gtaaaacaaattattaaacacaatcatagaaattgaagatagtcctctcaaaaaaataaaaataaaaattgaagatagtaacttgttgaattaaacaata |
37998656 |
T |
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| Q |
101 |
gaaaatatttagattactcaattaacaccaagaaatttaccaaacaaagctattttgttagttctagcactcaggtttatcttaccatcagtaactctaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37998657 |
gaaaatatttagattactcaattaacactaagaaatttaccaaacaaagctattttgttagttctagcactcaggtttatcttaccatcagtaactctaa |
37998756 |
T |
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| Q |
201 |
atctcgtttact |
212 |
Q |
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|||||||||||| |
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| T |
37998757 |
atctcgtttact |
37998768 |
T |
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