View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17081_low_8 (Length: 532)

Name: NF17081_low_8
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17081_low_8
NF17081_low_8
[»] chr7 (2 HSPs)
chr7 (18-516)||(45437772-45438280)
chr7 (430-512)||(45676263-45676345)
[»] chr1 (4 HSPs)
chr1 (167-295)||(38269478-38269606)
chr1 (418-516)||(38269725-38269823)
chr1 (433-515)||(37962659-37962741)
chr1 (165-295)||(37962865-37962995)
[»] chr4 (1 HSPs)
chr4 (180-265)||(5690661-5690746)
[»] chr3 (2 HSPs)
chr3 (213-302)||(33695338-33695427)
chr3 (254-304)||(24437187-24437237)
[»] chr5 (2 HSPs)
chr5 (198-292)||(1319291-1319385)
chr5 (242-298)||(2590840-2590896)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 45438280 - 45437772
Alignment:
Q  18 tcaataaggtttgaaaaataaaaagaatgatccaacaaccacataacaattaaaaaatacgctagagtctaacgcaagtggttggtgtgtcgtgtgtgag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45438280 tcaataaggtttgaaaaataaaaagaatgatccaacaaccacataacaattaaaaaatacgccagagtctaacgcaagtggttggtgtgtcgtgtgtgag 45438181  T
Q  118 tgttgtaaactctggtaaatcatacttaaaaaagaaggattgaatttaattacctattccctagtactgaatgaagttcaatgatgagattttcttcttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45438180 tgttgtaaactctggtaaatcatacttaaaaaagaaggattgaatttaattacctattccctagtactgaatgaagttcaatgatgagattttcttcttc 45438081  T
Q  218 ttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttgaagacctatgccat-------- 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  45438080 ttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttgaagacctatgccatgccatgcc 45437981  T
Q  310 --gccaataaaatacattatatatcaacaacagtttcttctctaatctcataattatattctaaaaggagattgaaatattaaaatttggatnnnnnnnn 407  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            
T  45437980 atgccaataaaatacattatatatcaacaacagtttcttctctaatctcataattatatgctaaaaggagattgaaatattaaaatttggattatatata 45437881  T
Q  408 nnnnnnnnnncctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccataga 507  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45437880 aatatatatacctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccataga 45437781  T
Q  508 cctttccta 516  Q
    |||||||||    
T  45437780 cctttccta 45437772  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 512
Target Start/End: Original strand, 45676263 - 45676345
Alignment:
Q  430 ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagaccttt 512  Q
    |||||||| ||||||||||||||||||| ||| || |||| ||||||||| |||||||| || || || ||||| ||||||||    
T  45676263 ggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagaccttt 45676345  T

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Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 38269478 - 38269606
Alignment:
Q  167 ttacctattccctagtactgaatgaagttcaatgatgagattttcttcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccac 266  Q
    |||||||||||| || |||| |||||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  38269478 ttacctattccccagaactgcatgaagttcaacaatgagattttcttcctcttgtgagaatgttcctctttttaaatcaggtcttaagtaattgatccac 38269577  T
Q  267 ctaagcctacagctcttaccacatctttg 295  Q
    |||||||| ||||||||||||||||||||    
T  38269578 ctaagcctgcagctcttaccacatctttg 38269606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 516
Target Start/End: Original strand, 38269725 - 38269823
Alignment:
Q  418 cctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttccta 516  Q
    |||||||||||||| |||||||||||||||||||||||||| || || |||||  |||  ||||||||||| || || |||||||||||||||||||||    
T  38269725 cctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagtttttcatcttcttctggtgaccatagacctttccta 38269823  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 515
Target Start/End: Complemental strand, 37962741 - 37962659
Alignment:
Q  433 actgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcct 515  Q
    ||||||||||||||||||||||||| ||| ||||| | ||||||||| || ||||| |||||||| ||||| || ||||||||    
T  37962741 actgaactccaacatccatgaccatgtttggtaatgtaattcaaaagcttctcatcttcctcaggagaccaaagtcctttcct 37962659  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 37962995 - 37962865
Alignment:
Q  165 aattacctattccctagtactgaatgaagttcaatgatgagattttcttcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatcc 264  Q
    |||||||| || || ||||| | ||||||||||||||| | ||| ||||||| |||||| ||||  |||||||| ||||||||||| |||||||| ||||    
T  37962995 aattacctgttaccaagtacagcatgaagttcaatgatcaaattctcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatcc 37962896  T
Q  265 acctaagcctacagctcttaccacatctttg 295  Q
    | || | ||| || ||||| ||||| |||||    
T  37962895 atcttaacctgcaactcttcccacacctttg 37962865  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 5690746 - 5690661
Alignment:
Q  180 agtactgaatgaagttcaatgatgagattttcttcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatcca 265  Q
    ||||||| ||||||||||||||| | ||| ||||||| |||||| ||||  |||||||| ||||||||| |||||||||| |||||    
T  5690746 agtactgcatgaagttcaatgatcaaattctcttcttattgtgagaatgctcctcttttcaaatcaggcgttaagtaatttatcca 5690661  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 33695427 - 33695338
Alignment:
Q  213 tcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttgaagacct 302  Q
    |||||||| |||||| | ||||| || | |||||||||||| |||||  ||||||| |||||||| ||||| |||||||| | |||||||    
T  33695427 tcttcttgagaaaattttcctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatctattaagacct 33695338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 24437237 - 24437187
Alignment:
Q  254 gtaattaatccacctaagcctacagctcttaccacatctttgaagacctat 304  Q
    ||||||| ||||||| ||||| |||||||| |||||||| |||||||||||    
T  24437237 gtaattagtccaccttagcctgcagctctttccacatctctgaagacctat 24437187  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 1319291 - 1319385
Alignment:
Q  198 atgatgagattttcttcttcttgtgaaaatgtacctctttttaaatcaggccttaagtaattaatccacctaagcctacagctcttaccacatct 292  Q
    |||||||||||||||||||| |  || ||| | |||||| | | |||||||||||  |||||| |||| ||||| ||||| ||||| ||||||||    
T  1319291 atgatgagattttcttcttcatcagagaattttcctcttctaatatcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 2590896 - 2590840
Alignment:
Q  242 atcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttgaag 298  Q
    |||||||||||| ||||| ||||| || | |||||| ||||||||||| ||||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttgaag 2590840  T

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