View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17081_low_9 (Length: 506)
Name: NF17081_low_9
Description: NF17081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17081_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Complemental strand, 34746580 - 34746126
Alignment:
| Q |
3 |
gatgtccaagaaaatatttctccaaattatatggtgttaagccaaccaatgacatgttcaatccatgtgattttggaaacttctatacatagtatagtaa |
102 |
Q |
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| T |
34746580 |
gatgtccaaataaatatttctccaaattttatggtgttaagccaaccaatgacatgttcaatccatgtgattttggaaacttctatacatagtatagtaa |
34746481 |
T |
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| Q |
103 |
ccagaaagaagttgaccgttagtacaatggaacnnnnnnnnnnnnnnnnnngatagaatttttgccacactaacatgatatgagcttcaacttgaagtca |
202 |
Q |
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| T |
34746480 |
ccagaaagaagttgaccgttagtacaatggaacaaaaaaaaagtcaaaaaagatggaatttttgccacactaacatgagatgagcttcaacttgaagtca |
34746381 |
T |
|
| Q |
203 |
tgaacat-------------gaagtacatgcgtgcaaacacagcactatatattatgattttgtatttttcttttctctctctaattggttctctgcaat |
289 |
Q |
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| T |
34746380 |
tgaacataaaacatgaacatgaagtacatgcgtgcaaacacagcactatatattatgattttgtattgtttttttctctctctaattggttctctgcaat |
34746281 |
T |
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| Q |
290 |
ctacccttaacttaatattctcctcatcagcagattccctaaaacaccatctttctgccactttctcttcattgctttccaagccaagaatctctctgat |
389 |
Q |
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| T |
34746280 |
ctacccttaacttaatattctcctcatcagcagattccctaaaacaccatctttctgccactttctcttcattgctttccaagccaagaatctctctgat |
34746181 |
T |
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| Q |
390 |
tcctctcctcatctcttcactttttcaaccactattaaccatccatctacaatgc |
444 |
Q |
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| T |
34746180 |
tcctctcctcatctcttcactttttcaaccactattaaccatccatctacaatgc |
34746126 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 31052682 - 31052718
Alignment:
| Q |
349 |
actttctcttcattgctttccaagccaagaatctctc |
385 |
Q |
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| T |
31052682 |
actttcttttcattgctttccaagccaagaatctctc |
31052718 |
T |
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