View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_16 (Length: 426)
Name: NF17082_high_16
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 2835614 - 2835217
Alignment:
| Q |
11 |
cacagaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835614 |
cacaaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaat |
2835515 |
T |
|
| Q |
111 |
aacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttc |
210 |
Q |
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| T |
2835514 |
aacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttc |
2835415 |
T |
|
| Q |
211 |
tctagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835414 |
tctagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggta |
2835315 |
T |
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| Q |
311 |
gaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctggtgattcttcaaattgtgttatacccttttcggct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835314 |
gaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctggtgattcttcaaattgtgttatacccttttcggct |
2835217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 44265365 - 44265719
Alignment:
| Q |
23 |
aatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataacaagctcaaa |
122 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||| | || |||| ||| ||||||| |||||||||||| | ||||||||||||||||| |
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| T |
44265365 |
aatcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaac |
44265464 |
T |
|
| Q |
123 |
atccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttctctagctcttgt |
222 |
Q |
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||||||||| ||||||||||| ||||| |||||||| || | ||||||||||| ||||||||||||||||||||||||||| ||||| || || | |
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| T |
44265465 |
atccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattcgattctcaagatcggtt |
44265564 |
T |
|
| Q |
223 |
ctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggtagaacattaacta |
322 |
Q |
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| ||| | || ||| |||||||| |||||| | | || | |||||| ||||| |||||||| |||||||| |||||||| |||||| | |||| |
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| T |
44265565 |
cgataagtagactcgacaagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgacta |
44265664 |
T |
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| Q |
323 |
aggtttctacaaagaaccttttcttcatccatgatgttgttacactctctggtga |
377 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
44265665 |
aggtttcaacaaagaaccttttcttcatccatgatgttgttacactttcaggtga |
44265719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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