View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_high_17 (Length: 408)

Name: NF17082_high_17
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_high_17
NF17082_high_17
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-133)||(59462-59585)
[»] chr1 (2 HSPs)
chr1 (10-98)||(33212719-33212807)
chr1 (28-123)||(40173663-40173758)
[»] chr2 (3 HSPs)
chr2 (10-98)||(38260742-38260828)
chr2 (10-81)||(24845955-24846026)
chr2 (59-125)||(40068390-40068462)
[»] chr8 (1 HSPs)
chr8 (28-96)||(8003782-8003850)
[»] chr4 (3 HSPs)
chr4 (10-98)||(8354477-8354564)
chr4 (53-123)||(52476329-52476406)
chr4 (53-98)||(17558663-17558708)
[»] scaffold0189 (1 HSPs)
scaffold0189 (59-116)||(26234-26291)
[»] scaffold0181 (1 HSPs)
scaffold0181 (53-123)||(3202-3273)
[»] chr6 (1 HSPs)
chr6 (92-124)||(18367796-18367828)


Alignment Details
Target: scaffold0016 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 59585 - 59462
Alignment:
Q  10 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |||    
T  59585 attattctcacaaaatactttattttattaatatataaaatatatatcgccgtgtccgtgtcctacgtttttttagattagccgtgtccgtgtcgtatcc 59486  T
Q  110 cgtgtccgtgtccgtgcatcatag 133  Q
     | |||||||||||||||||||||    
T  59485 tgcgtccgtgtccgtgcatcatag 59462  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 33212719 - 33212807
Alignment:
Q  10 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgtcc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33212719 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgtttttttagattagccgtgtcc 33212807  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 40173758 - 40173663
Alignment:
Q  28 tttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcccgtgtccgtgtccg 123  Q
    ||||||||||||| || |||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40173758 tttattttattaacatgtaaagtatatatagccgtgtccgtgtcctaggtttttttagattagccgtgtccgtgtcgtgtcccgtgtccgtgtccg 40173663  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 38260828 - 38260742
Alignment:
Q  10 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgtcc 98  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||  ||||||||||||||| ||||||| |||||||    
T  38260828 attattctcacaaaatacattattttattcatatataaaatatatatagccgtgtc--tgtcctacgtttttttagattagtcgtgtcc 38260742  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 24845955 - 24846026
Alignment:
Q  10 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttt 81  Q
    |||||||| | |||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24845955 attattcttataaaatattgtattttattaaaatataaaatatatatagccgtgtccgtgtcctacgttttt 24846026  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 40068390 - 40068462
Alignment:
Q  59 ccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtc------gtgtcccgtgtccgtgtccgtg 125  Q
    ||||||| |||||||| ||||||| ||||||||||||||| ||||      ||||||||||||||||||||||    
T  40068390 ccgtgtcggtgtcctaggtttttttagattagccgtgtccgtgtccgtgtcgtgtcccgtgtccgtgtccgtg 40068462  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 8003850 - 8003782
Alignment:
Q  28 tttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgt 96  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||  |||||| |||||||||||||    
T  8003850 tttattttattaacatgtaaaatatatatagccgtgtccgtgtcctagatttttttagattagccgtgt 8003782  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 8354564 - 8354477
Alignment:
Q  10 attattctcacaaaatactttattttattaatatataaaatatatattgccgtgtccgtgtcctacgttttttcagattagccgtgtcc 98  Q
    |||||||| | |||||| | ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||| |||||||    
T  8354564 attattcttataaaatattgtattttattaaaatataaaatatatatagacgtgtccgtgtactacgtttttt-agattagtcgtgtcc 8354477  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 52476406 - 52476329
Alignment:
Q  53 atattgccgtgtccgtgtcctacgttttttcagattagccgt-------gtccatgtcgtgtcccgtgtccgtgtccg 123  Q
    |||| |||||||| |||||||| ||||||| |||||||||||       |||| ||||||||||||||||||||||||    
T  52476406 atatagccgtgtcggtgtcctaagtttttttagattagccgtgtcccgtgtccgtgtcgtgtcccgtgtccgtgtccg 52476329  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 17558708 - 17558663
Alignment:
Q  53 atattgccgtgtccgtgtcctacgttttttcagattagccgtgtcc 98  Q
    |||| |||||||| |||||||| ||||||| |||||||||||||||    
T  17558708 atatagccgtgtcggtgtcctaagtttttttagattagccgtgtcc 17558663  T

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Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 26291 - 26234
Alignment:
Q  59 ccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcccgtgtcc 116  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||  |||||||||||||    
T  26291 ccgtgtccgtgtcctaggtttttttagattagccgtgtccgtgctgtgtcccgtgtcc 26234  T

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Target: scaffold0181 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 3202 - 3273
Alignment:
Q  53 atattgccgtgtccgtgtcctacgttttttc-agattagccgtgtccatgtcgtgtcccgtgtccgtgtccg 123  Q
    |||| |||||||| |||||||| |||||||  |||||||| |||||| | ||||||||||| ||||||||||    
T  3202 atatagccgtgtcggtgtcctaggttttttttagattagctgtgtccgtttcgtgtcccgtctccgtgtccg 3273  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 18367828 - 18367796
Alignment:
Q  92 cgtgtccatgtcgtgtcccgtgtccgtgtccgt 124  Q
    |||||||||||||||||| ||||||||||||||    
T  18367828 cgtgtccatgtcgtgtccggtgtccgtgtccgt 18367796  T

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