View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_18 (Length: 397)
Name: NF17082_high_18
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_18 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: scaffold0543 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 3031 - 3255
Alignment:
| Q |
7 |
tagattattctactaaagcctacacctagtagatattcctaaaataatgtaaaatacataactgtcgaaacttcttcctagacctctttaaaaagatata |
106 |
Q |
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| T |
3031 |
tagattattctactaaagcctacacctagtagatattcctaaaataatgtaaaatacataactgtcgaaacttcttcctagacctctgtaaaaagatata |
3130 |
T |
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| Q |
107 |
gccaacttcttccttgatccattttagagcaagccacaagctagctatcttataccactacaaagtgtattactcccatttgtaaaaaactaacagtatt |
206 |
Q |
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| T |
3131 |
gccaacttcttccttgatccattttagagcaagccacaagctagctatcttataccactacaaagtgtattactcccatttgtaaaaaactaacagtatt |
3230 |
T |
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| Q |
207 |
ttataagtttgaactactgatttgc |
231 |
Q |
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|||||||||||||| |||||||||| |
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| T |
3231 |
ttataagtttgaacgactgatttgc |
3255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 275 - 397
Target Start/End: Original strand, 3299 - 3421
Alignment:
| Q |
275 |
cctgtcgtatgcgcagatgctgcgccatatgaagccaatcgtaccaaataagatcatcagaaatattagctcttaccaaattgggaaggcttagaaccac |
374 |
Q |
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| T |
3299 |
cctgtcgtatgcgcagatgctgcgccatatgaagccaatcgtaccgaataagatcatcagaaatattagctcttaccaaattgggaaggcttagaaccac |
3398 |
T |
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| Q |
375 |
tactcttagaaccctagaatatt |
397 |
Q |
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| T |
3399 |
cacccttagaaccctagaatatt |
3421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 4577 - 4801
Alignment:
| Q |
7 |
tagattattctactaaagcctacacctagtagatattcctaaaataatgtaaaatacataactgtcgaaacttcttcctagacctctttaaaaagatata |
106 |
Q |
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| T |
4577 |
tagattattctactaaagcctacacctagtagatattcctaaaataatgtaaaatacataactgtcgaaacttcttcctagacctctgtaaaaagatata |
4676 |
T |
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| Q |
107 |
gccaacttcttccttgatccattttagagcaagccacaagctagctatcttataccactacaaagtgtattactcccatttgtaaaaaactaacagtatt |
206 |
Q |
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| T |
4677 |
gccaacttcttccttgatccattttagagcaagccacaagctagctatcttataccactacaaagtgtattactcccatttgtaaaaaactaacagtatt |
4776 |
T |
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| Q |
207 |
ttataagtttgaactactgatttgc |
231 |
Q |
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| T |
4777 |
ttataagtttgaacgactgatttgc |
4801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 275 - 397
Target Start/End: Original strand, 4845 - 4967
Alignment:
| Q |
275 |
cctgtcgtatgcgcagatgctgcgccatatgaagccaatcgtaccaaataagatcatcagaaatattagctcttaccaaattgggaaggcttagaaccac |
374 |
Q |
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| T |
4845 |
cctgtcgtatgcgcagatgctgcgccatatgaagccaatcgtaccgaataagatcatcagaaatattagctcttaccaaattgggaaggcttagaaccac |
4944 |
T |
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| Q |
375 |
tactcttagaaccctagaatatt |
397 |
Q |
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| T |
4945 |
cacccttagaaccctagaatatt |
4967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 8989496 - 8989552
Alignment:
| Q |
7 |
tagattattctactaaagcctacacctagtagatattcctaaaataatgtaaaatac |
63 |
Q |
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| T |
8989496 |
tagattattctactaaagcctacacctagtagatatttctagaataatttaaaatac |
8989552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 21513177 - 21513118
Alignment:
| Q |
123 |
atccattttagagcaagccacaagctagctatcttataccactacaaagtgtattactcc |
182 |
Q |
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|||||||||||||||| |||||||||| |||||| || |||||||||||||| |||||| |
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| T |
21513177 |
atccattttagagcaaaccacaagctaattatcttctaacactacaaagtgtactactcc |
21513118 |
T |
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