View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_19 (Length: 392)
Name: NF17082_high_19
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 45382383 - 45382017
Alignment:
| Q |
19 |
atatttatatagtttagaaactaaattagatagacagtttagagagagtaagttgatannnnnnnnnnnnnnnnnnnnnnnatgtattcaagtattaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45382383 |
atatttatatagtttagaaactaaattagatagacagtttagagagagtaagttgataatttatttattattattattttaatgtattcaagtattaata |
45382284 |
T |
|
| Q |
119 |
acgtgtagaagagttgatttgtttcattttaagtttgtcgttattataagtatacacggttttgttttggactgggtagcatttgtaatggcttttgtcc |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382283 |
acgtgtagaagacttgatttgtttcattttaagtttgtcgtaattataagtatacacggttttgttttggactgggtagcatttgtaatggcttttgtcc |
45382184 |
T |
|
| Q |
219 |
tctttaagaact---ggtgaagatgaagacaactagatgattttaagtcatgcaaaattatcagtgagattatgacacgtatattttactatggggacag |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382183 |
tctttaagaactactggtgaagatgaagacaactagatgattttaagtcatgcaaaattatcagtgagattatgacacgtatattttactatggggacag |
45382084 |
T |
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| Q |
316 |
aacaagcactcctatttctatttcatagtgacttactttagtctttgataatgacttgtgttctgtg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382083 |
aacaagcactcctatttctatttcatagtgacttactttagtctttgataatgacttgtgttctgtg |
45382017 |
T |
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