View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_2 (Length: 824)
Name: NF17082_high_2
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 85 - 527
Target Start/End: Complemental strand, 9037327 - 9036888
Alignment:
| Q |
85 |
catattgtccatttgatatgcctttcatattgtgcatttaaatgtcgtctactgatttgaagtaagagaattaacagaggtaacttagcctagtgaacat |
184 |
Q |
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| T |
9037327 |
catattgtgcatttgagatgc-ttacatattgtgcatttaaatgtcgtctactgatttgaagtaagagaattaacaaaggtaacttagccaagtaaacat |
9037229 |
T |
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| Q |
185 |
accaatttcagaacaacatattaatttaattcaatgagatgctttactaaaatgatgcccagttctnnnnnnnttagtttttggttcaatatttagattg |
284 |
Q |
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| T |
9037228 |
accaatttcagaacaacatattaatttaattcaatgagatgctttactaaaatgatgcccagttctaaaaaa-ttagtttttggctcaatatttagattg |
9037130 |
T |
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| Q |
285 |
aagacgcgttttggacattcattaacaataac-aatacatattaccctttagaaaatatacannnnnnnaggggaaaaatacatattgaactttatttca |
383 |
Q |
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| T |
9037129 |
aagacgcgttttggacattcattaacaataaccaatacatattaccctttagaaaatatacatttttttaggggaaaaatacatattgaactttatttca |
9037030 |
T |
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| Q |
384 |
tgggtttatcattcaatatcactaaaatatactcgtgtcatctactgagggctatgcctatgggtattggttttagatagatagacattgtttcgattcc |
483 |
Q |
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| T |
9037029 |
cgggtttatcattcaatatcactaaaatatactcgtgtcatctactgagggctatgcctatgggtattggttttagatagatagacattgtttcgattcc |
9036930 |
T |
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| Q |
484 |
tacaaagaataaaatctaatagttataatatcatttatataatt |
527 |
Q |
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| T |
9036929 |
tacaaaga--aaaatctaatagttataatatcatttatataatt |
9036888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 545 - 808
Target Start/End: Complemental strand, 9036901 - 9036637
Alignment:
| Q |
545 |
tcatttatataattggccgatcggttttgatttgagatcgggagttagtgtctaattcataaaatttgggcttactttggtgttttctccggtagaccgg |
644 |
Q |
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| T |
9036901 |
tcatttatataattggccgatcggttttgatttgagatcgggagttagtgtctagttcaaaaaatttgggcttactttggtgttttctccggtagaccgg |
9036802 |
T |
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| Q |
645 |
tggttgagggnnnnnnnn-aatgatttgtttatgaagttaggtgggtcgatcacttttgtttttgaagtctagttcaaaaaattatttatataactggcc |
743 |
Q |
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| T |
9036801 |
tagttgaggttttttttttaatgatttgtttatgaagttaggtgggtcgatcgcttttgtttttgaagtctagttcaaaaaatcatttatataactggcc |
9036702 |
T |
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| Q |
744 |
tatcacttttgtttctcaagtttttgtgctcgttatgatgtcttctctggcgtactggaggttga |
808 |
Q |
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| T |
9036701 |
tatcgcttttgtttctcaagtttttgtgctcgttatgatgtcttctctggcgtactggaggttga |
9036637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 9037258 - 9037203
Alignment:
| Q |
29 |
ttaacaaacgtaacttagccaagagagcataccaatttcagaacaacgtattaatt |
84 |
Q |
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| T |
9037258 |
ttaacaaaggtaacttagccaagtaaacataccaatttcagaacaacatattaatt |
9037203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 758 - 800
Target Start/End: Complemental strand, 30505332 - 30505290
Alignment:
| Q |
758 |
ctcaagtttttgtgctcgttatgatgtcttctctggcgtactg |
800 |
Q |
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| T |
30505332 |
ctcaagtttttgtgcttgttatggtgtcttctctggcgaactg |
30505290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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